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Publications by SHARCNET researchers in 2006

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Title Published SHARCNET Authors Area
181. Nano-jewellery: C<sub>5</sub>Au<sub>12</sub> – a gold-plated diamond at molecular level. 2006 F. Naumkin Computational Chemistry
182. Simulations of collision times in gravity driven granular flow 2006 J. J. Drozd, C. Denniston Image Processing
183. Monte Carlo basin paving: An improved global optimization method 2006 L. X. Zhan, J. Z. Y. Chen, and W.-K. Liu Soft Matter Physics
184. Dependence of folding dynamics and structural stability on the location of a hydrophobic pair in beta-hairpins 2006 H. Imamura and J. Z. Y. Chen Soft Matter Physics
185. Persistency of single-stranded DNA: The interplay between base sequences and base stacking 2006 A. Sain, J. Z. Y. Chen, and B.-Y. Ha Soft Matter Physics
186. Mean first-passage times of looping of polymers with intrachain reactive monomers: lattice Monte Carlo simulations 2006 T. Cui T, J. D. Ding, and J. Z. Y. Chen Soft Matter Physics
187. Conformational study of Met-Enkephalin based on the ECEPP force fields 2006 L. X. Zhan, J. Z. Y. Chen, and W.-K. Liu Soft Matter Physics
188. Free energy of a wormlike polymer chain confined in a slit: Crossover between two scaling regimes 2006 J. Z. Y. Chen and D. E. Sullivan Soft Matter Physics
189. A Threaded Parallel Code for Pricing Discrete Asian Options on SMP Systems 2006 B. Ge, A. B. MacIsaac, H. Rasmussen High Performance Computing Numerical Methods Condensed Matter Physics
190. Atomic determinants of state-dependent block of sodium channels by charged local anesthetics and benzocaine 2006 Tikhonov DB, Bruhova I, Zhorov BS Biophysics
191. Effects of Polydispersity on Phase Behavior of Diblock Copolymers 2006 David M. Cooke, An-Chang Shi Soft Matter Physics
192. Protein structure generation and elucidation: applications of automated histogram filtering cluster analysis 2006 Heather Gordon and Stuart M. Rothstein Computational Chemistry Biophysics
193. Measurements and CFD Simulations of Gas Holdup and Liquid Velocity in Novel Airlift Membrane Contactor 2006 B. Jajuee, A. Margaritis, D. Karamanev, M. A. Bergougnou and S. A. Mohsen Karimian Computational Fluid Dynamics
194. Effects of Reynolds stress on flow noise from vortex/hydrofoil interactions 2006 Z. C. Zheng, Y. Xu Computational Fluid Dynamics
195. Operons Across Prokaryotes: Genomic Analyses and Predictions 300+ Genomes Later 2006 G Moreno-Hagelsieb Computational Biology, Systems Biology
196. Testing the Significance of Categorical Predictor Variables in Nonparametric Regression Models 2006 Jeffrey S. Racine, Jeffrey Hart, Qi Li Statistical Simulation
197. Genome assembly comparison identifies structural variants in the human genome 2006 Razi Khaja, Junjun Zhang, Jeffrey R MacDonald, Yongshu He, Ann M Joseph-George, John Wei, Muhammad A Rafiq, Cheng Qian, Mary Shago, Lorena Pantano, Hiroyuki Aburatani, Keith Jones, Richard Redon, Matthew Hurles, Lluis Armengol, Xavier Estivill, Richard J Mural, Charles Lee, Stephen W Scherer, Lars Feuk Bioinformatics
198. The distinctive signatures of promoter regions and operon junctions across prokaryotes 2006 SC Janga, WF Lamboy, AM. Huerta and G Moreno-Hagelsieb Computational Biology, Systems Biology
199. A Scalable Parallel Implementation of a k-Space Method for Large-Scale Ultrasound Imaging Simulations 2006 Mohammad I. Daoud, Yi-Ting Shen, and James C. Lacefield Biomedical Modeling and Simulation
200. How Large Is the [Fe<sup>III</sup>(Protoporphyrin IX)]<sup>+</sup> Ion (Hemin<sup>+</sup>) in the Gas Phase? 2006 Chi-Kit Siu, Yuzhu Guo, Alan C. Hopkinson, K. W. Michael Siu Computational Chemistry