Publications in area "Bioinformatics"

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Title	Published	SHARCNET Authors	Area
1. Prediction of Mutant mRNA Splice Isoforms by Information Theory-Based Exon Definition	2013	EJ Mucaki, B Shirley, PK Rogan	Bioinformatics
2. Structural and genic characterization of stable genomic regions in breast cancer: Relevance to chemotherapy	2012	Park N, Rogan PK, Tarnowski H, Knoll JHM	Bioinformatics
3. Finding nearly optimal GDT scores	2011	S.C. Li, D. Bu, J. Xu, and M. Li	Bioinformatics
4. Error tolerant NMR backbone resonance assignment for automated structure generation	2011	B. Alipanahi, X. Gao, E. Karakoc, F. Balbach, S.C. Li, G. Feng, L. Donaldson, M. Li	Bioinformatics
5. Residues with similar hexagon neighborhoods share similar side-chain conformations.	2011	S.C. Li, D. Bu, M. Li	Bioinformatics
6. Comprehensive prediction of mRNA splicing effects of BRCA1 and BRCA2 variants	2011	Mucaki E, Ainsworth P, Rogan P	Bioinformatics
7. Towards fully automated structure-based NMR assignment of 15N-labeled proteins from automatically picked peaks.	2010	Richard Jang, X. Gao, M. Li	Bioinformatics
8. Protein secondary structure prediction using NMR chemical shift data.	2010	Y. Zhao, B. Alipanahi, S.C. Li, M. Li,	Bioinformatics
9. Can we determine a protein structure quickly?	2010	M. Li	Bioinformatics
10. Finding compact structural motifs	2009	D. Bu, M. Li, S.C. Li, J. Qian, J. Xu	Bioinformatics
11. A probabilistic graphical model for protein ab initio folding	2009	F Zhao, J Peng, J DeBartolo, K Freed, T Sosbnick, J Xu	Bioinformatics
12. Improving consensus contact prediction via server correlation reduction	2009	X Gao, D Bu, J Xu, M Li	Bioinformatics
13. Predicting local quality of a sequence-structure alignment	2009	X. Gao, J. Xu, S. C. Li, M. Li	Bioinformatics
14. Accelerating Nonlinear System Identification Using the Cell BE Processor	2009	R. Rohra, R. Kanagasundaram, J.R. Green	Bioinformatics
15. PICKY: an SVD-based spectra peak picking method	2009	B. Alipanahi, X. Gao, E. Karakoc, L. Donaldson, A. Gutmanas, C. Arrowsmith, and M. Li	Bioinformatics
16. On two open problems of 2-interval patterns	2009	S.C. Li and M. Li	Bioinformatics
17. Predicting local quality of a sequence-structure alignment	2009	X. Gao, J. Xu, S. C. Li, and M. Li	Bioinformatics
18. Rapid and accurate protein side chain prediction with local backbone information	2008	J. Zhang, X. Gao, J. Xu, and M. Li	Bioinformatics
19. Discriminative learning for protein conformation sampling	2008	Feng Zhao, ShuaiCheng Li, Beckett W. Sterner and Jinbo Xu.	Bioinformatics
20. Design Succinct Structural Alphabets	2008	Shuaicheng Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li	Bioinformatics

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