SIGN-IN

BIOPERL (Bioinformatics)

Introduction

BioPerl is a toolkit of perl modules useful in building bioinformatics solutions in Perl. It is built in an object-oriented manner so that many modules depend on each other to achieve a task. The collection of modules in the bioperl-live repository consist of the core of the functionality of bioperl. Additionally auxiliary modules for creating graphical interfaces (bioperl-gui), persistent storage in RDMBS (bioperl-db), running and parsing the results from hundreds of bioinformatics applications (Run package), software to automate bioinformatic analyses (bioperl-pipeline) are all available as Subversion modules in our repository.

Availability Table

System Versions
graham 1.7.1
iqaluk 1.6.923, 1.6.924
vdi-centos6 1.6.923, 1.6.924
goblin 1.6.923, 1.6.924
copper 1.6.923, 1.6.924
mosaic 1.6.923, 1.6.924
wobbie 1.6.923, 1.6.924

Mailing List

To sign up for email notices about pending version updates, removals and other important announcements for this software package, sign in.

Change Log

o May 10, 2016: Installed bioperl/1.6.293 and bioperl/1.6.924 on copper.
o Oct 29, 2015: Installed bioperl/1.6.924 on angel, brown, goblin, iqaluk, kraken, mako, monk, mosaic, orca, redfin, saw, tembo, vdi-centos6, windeee, wobbie. (hound pending)
o Oct 28, 2014: Removed bioperl/1.6.1 from angel, brown, goblin, hound, iqaluk, kraken, monk, orca, redfin, saw and wobbie.
o Apr 3, 2014: Installed bioperl/1.6.293 on angel, brown, goblin, hound, iqaluk, kraken, monk, orca, redfin, saw and wobbie.
o Jan 3, 2013: Rebuilt then completely reinstalled bioperl/1.6.1 on monk, angel, goblin, hound, iqaluk, orca, redfin and saw to support rhel6 shared libraries on recently reinstalled systems.
o Feb 28, 2012: Reinstalled bioperl/1.6.1 as an optionally loadable sharcnet module.