SAMTOOLS (Bioinformatics)
Introduction
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
Availability Table
| Version | Default | Module | Systems |
|---|---|---|---|
| 0.1.19 |
|
copper, goblin, iqaluk, monk, mosaic, orca, redfin, tembo, vdi-centos6, windeee, wobbie | |
| 1.1 |
|
copper, goblin, iqaluk, monk, mosaic, orca, redfin, tembo, vdi-centos6, windeee, wobbie | |
| 1.2 |
|
copper, goblin, iqaluk, monk, mosaic, orca, redfin, tembo, vdi-centos6, windeee, wobbie | |
| 1.3.1 |
|
copper, goblin, iqaluk, monk, mosaic, orca, redfin, tembo, vdi-centos6, windeee, wobbie | |
| system |
|
vdi-fedora20, viz10-uwo, viz11-uwo |
Documentation
https://www.sharcnet.ca/help/index.php/SAMTOOLS
Mailing List
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Change Log
o Oct 29, 2015: Installed samtools/1.3.1 on angel, brown, copper, goblin, iqaluk, kraken, mako, monk, mosaic, orca, redfin, saw, tembo, vdi-centos6, windeee, wobble.
o Oct 29, 2015: Installed samtools/0.1.19 on angel, brown, copper, goblin, iqaluk, kraken, mako, monk, mosaic, orca, redfin, saw, tembo, vdi-centos6, windeee, wobbie. (hound pending)
o Feb 12, 2014: Installed samtools/1.2 on angel, brown, goblin, hound, iqaluk, kraken, monk, mosaic, orca, redfin, saw, vdi-centos6 and wobbie. Installed system version of samtools on on vdi-fedora20, viz10-uwo and viz11-uwo.
o Jan 15, 2014: Installed samtools/1.1 on all centos6 clusters.