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SAMTOOLS (Bioinformatics)

Introduction

SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

Availability Table

System Versions
vdi-centos6 0.1.19, 1.1, 1.2, 1.3.1
iqaluk 0.1.19, 1.1, 1.2, 1.3.1
wobbie 0.1.19, 1.1, 1.2, 1.3.1
copper 0.1.19, 1.1, 1.2, 1.3.1

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Change Log

o Oct 29, 2015: Installed samtools/1.3.1 on angel, brown, copper, goblin, iqaluk, kraken, mako, monk, mosaic, orca, redfin, saw, tembo, vdi-centos6, windeee, wobble.
o Oct 29, 2015: Installed samtools/0.1.19 on angel, brown, copper, goblin, iqaluk, kraken, mako, monk, mosaic, orca, redfin, saw, tembo, vdi-centos6, windeee, wobbie. (hound pending)
o Feb 12, 2014: Installed samtools/1.2 on angel, brown, goblin, hound, iqaluk, kraken, monk, mosaic, orca, redfin, saw, vdi-centos6 and wobbie. Installed system version of samtools on on vdi-fedora20, viz10-uwo and viz11-uwo.
o Jan 15, 2014: Installed samtools/1.1 on all centos6 clusters.