SAMTOOLS (Bioinformatics)
Introduction
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
Availability Table
| System | Versions |
|---|---|
| viz10-uwo | system |
| orca | 0.1.19, 1.1, 1.2, 1.3.1 |
| copper | 0.1.19, 1.1, 1.2, 1.3.1 |
| iqaluk | 0.1.19, 1.1, 1.2, 1.3.1 |
| vdi-centos6 | 0.1.19, 1.1, 1.2, 1.3.1 |
| vdi-fedora20 | system |
| wobbie | 0.1.19, 1.1, 1.2, 1.3.1 |
| windeee | 0.1.19, 1.1, 1.2, 1.3.1 |
| mosaic | 0.1.19, 1.1, 1.2, 1.3.1 |
| monk | 0.1.19, 1.1, 1.2, 1.3.1 |
| goblin | 0.1.19, 1.1, 1.2, 1.3.1 |
Mailing List
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Change Log
o Oct 29, 2015: Installed samtools/1.3.1 on angel, brown, copper, goblin, iqaluk, kraken, mako, monk, mosaic, orca, redfin, saw, tembo, vdi-centos6, windeee, wobble.
o Oct 29, 2015: Installed samtools/0.1.19 on angel, brown, copper, goblin, iqaluk, kraken, mako, monk, mosaic, orca, redfin, saw, tembo, vdi-centos6, windeee, wobbie. (hound pending)
o Feb 12, 2014: Installed samtools/1.2 on angel, brown, goblin, hound, iqaluk, kraken, monk, mosaic, orca, redfin, saw, vdi-centos6 and wobbie. Installed system version of samtools on on vdi-fedora20, viz10-uwo and viz11-uwo.
o Jan 15, 2014: Installed samtools/1.1 on all centos6 clusters.