SIGN-IN

SAMTOOLS (Bioinformatics)

Introduction

SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

Availability Table

Version Default Module Systems
0.1.19 True copper, goblin, iqaluk, monk, mosaic, orca, redfin, tembo, vdi-centos6, windeee, wobbie
1.1 True copper, goblin, iqaluk, monk, mosaic, orca, redfin, tembo, vdi-centos6, windeee, wobbie
1.2 True copper, goblin, iqaluk, monk, mosaic, orca, redfin, tembo, vdi-centos6, windeee, wobbie
1.3.1 True copper, goblin, iqaluk, monk, mosaic, orca, redfin, tembo, vdi-centos6, windeee, wobbie
system True vdi-fedora20, viz10-uwo, viz11-uwo

Documentation

https://www.sharcnet.ca/help/index.php/SAMTOOLS

Mailing List

To sign up for email notices about pending version updates, removals and other important announcements for this software package, sign in.

Change Log

o Oct 29, 2015: Installed samtools/1.3.1 on angel, brown, copper, goblin, iqaluk, kraken, mako, monk, mosaic, orca, redfin, saw, tembo, vdi-centos6, windeee, wobble.
o Oct 29, 2015: Installed samtools/0.1.19 on angel, brown, copper, goblin, iqaluk, kraken, mako, monk, mosaic, orca, redfin, saw, tembo, vdi-centos6, windeee, wobbie. (hound pending)
o Feb 12, 2014: Installed samtools/1.2 on angel, brown, goblin, hound, iqaluk, kraken, monk, mosaic, orca, redfin, saw, vdi-centos6 and wobbie. Installed system version of samtools on on vdi-fedora20, viz10-uwo and viz11-uwo.
o Jan 15, 2014: Installed samtools/1.1 on all centos6 clusters.