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(newest | oldest) View (newer 500 | older 500) (20 | 50 | 100 | 250 | 500)- 10:43, 3 September 2021 Ppomorsk (Talk | contribs) deleted page JupyterViaViznode (content was: "{{Draft}} = Accessing Jupyter Notebook with the Graham Visualization Node = == Introduction == ==Installing Jupyter Notebook== For more details on the Jupyter soft..." (and the only contributor was "Edward"))
- 10:40, 3 September 2021 Ppomorsk (Talk | contribs) deleted page ESPRESSO (content was: "{{Template:CCDelete}} {{Outdated}} {{Software |package_name=ESPRESSO(PWSCF) |package_description=Plane-Wave Self-Consistent Field |package_idnumber=42 }} ==Introduction== Espresso, formerly named PWscf (Plane-Wave Self-Consistent Field),...")
- 10:39, 3 September 2021 Ppomorsk (Talk | contribs) deleted page FAQ (content was: "#REDIRECT Knowledge Base" (and the only contributor was "Dbm"))
- 10:38, 3 September 2021 Ppomorsk (Talk | contribs) deleted page Online Seminars (content was: "Please use this page instead: https://helpwiki.sharcnet.ca/wiki/Online_Seminars" (and the only contributor was "Syam"))
- 10:37, 3 September 2021 Ppomorsk (Talk | contribs) deleted page UWO Deliveries (content was: "Moved here: https://www.sharcnet.ca/help/index.php/UWO_Deliveries")
- 10:36, 3 September 2021 Ppomorsk (Talk | contribs) deleted page Linux and vi Editor Fundamentals (content before blanking was: " == Objectives == This self-directed tutorial is mainly for people who have none or very little experience in Linux system, particularly for Windows users who want to migrate to SHARCNET Linux systems. Examples shown i...")
- 10:36, 3 September 2021 Ppomorsk (Talk | contribs) deleted page Knowledge Base (content was: "The page moved here: https://helpwiki.sharcnet.ca/wiki/FAQ")
- 10:36, 3 September 2021 Ppomorsk (Talk | contribs) deleted page Dusky (content was: "Moved here: https://helpwiki.sharcnet.ca/wiki/Dusky")
- 10:34, 3 September 2021 Ppomorsk (Talk | contribs) deleted page FAQ: Programming and Debugging (content was: "The page moved here: https://helpwiki.sharcnet.ca/wiki/FAQ")
- 10:34, 3 September 2021 Ppomorsk (Talk | contribs) deleted page Summer Schools (content was: "Moved here: https://www.sharcnet.ca/help/index.php/Summer_Schools" (and the only contributor was "Syam"))
- 10:34, 3 September 2021 Ppomorsk (Talk | contribs) deleted page FAQ: Compiling and Running Programs (content was: "The page moved here: https://helpwiki.sharcnet.ca/wiki/FAQ")
- 10:33, 3 September 2021 Ppomorsk (Talk | contribs) deleted page Summer School Courses (content was: "Moved to https://helpwiki.sharcnet.ca/wiki/Summer_School_Courses" (and the only contributor was "Syam"))
- 10:32, 3 September 2021 Ppomorsk (Talk | contribs) deleted page Wiki tips and hints (content before blanking was: "This page is for tips and hints on using our wiki pages, things which are not trivial or generally known. Please use <nowiki> <nowiki> wiki syntax </nowiki> </nowiki> to actually show the raw wikimedia syntax. {{NeedsG...")
- 10:31, 3 September 2021 Ppomorsk (Talk | contribs) deleted page Parallel I/O introductory tutorial (content before blanking was: "{{Template:GrahamUpdate}} This self-study tutorial will discuss issues in handling large amount of data in HPC and also discuss a variety of parallel I/O strategies for doing large-scale Input/Output (I/O) with parallel...")
- 10:31, 3 September 2021 Ppomorsk (Talk | contribs) deleted page Staff: Armin Sobhani (content was: "200px * Armin was a senior researcher at the [http://bsc.es Barcelona Supercomputing Center (BSC)] prior to joining SHARCNET. *..." (and the only contributor was "Asobhani"))
- 10:31, 3 September 2021 Ppomorsk (Talk | contribs) deleted page Staff: Sergey Mashchenko (content before blanking was: "150px * Sergey has been with SHARCNET since 2006. * His research background is in computational astrophysics and cosmology. * His primary HPC expertise is in parallel code development (programmi...")
- 10:30, 3 September 2021 Ppomorsk (Talk | contribs) deleted page OpenMP (content before blanking was: "This tutorial introduces basic OpenMP concepts and issues to run OpenMP codes on SHARCNET and Compute Canada systems. To learn more about parallel programming with OpenMP, please see the references provided at the end of...")
- 10:28, 3 September 2021 Syam (Talk | contribs) automatically marked revision 18276 of page UWO Deliveries patrolled
- 10:28, 3 September 2021 Syam (Talk | contribs) automatically marked revision 18275 of page Summer Schools patrolled
- 10:27, 3 September 2021 Syam (Talk | contribs) automatically marked revision 18274 of page Staff: Sergey Mashchenko patrolled
- 10:26, 3 September 2021 Syam (Talk | contribs) automatically marked revision 18273 of page FAQ: Compiling and Running Programs patrolled
- 10:25, 3 September 2021 Syam (Talk | contribs) automatically marked revision 18272 of page Visualization patrolled
- 10:25, 3 September 2021 Syam (Talk | contribs) automatically marked revision 18271 of page Tutorials patrolled
- 10:24, 3 September 2021 Syam (Talk | contribs) automatically marked revision 18270 of page Summer School Courses patrolled
- 10:24, 3 September 2021 Syam (Talk | contribs) automatically marked revision 18269 of page Summer School Courses patrolled
- 10:23, 3 September 2021 Syam (Talk | contribs) automatically marked revision 18268 of page FAQ: Programming and Debugging patrolled
- 10:22, 3 September 2021 Syam (Talk | contribs) automatically marked revision 18267 of page Wiki tips and hints patrolled
- 09:40, 3 September 2021 Syam (Talk | contribs) automatically marked revision 18266 of page HPC PROGRAMMING patrolled
- 09:40, 3 September 2021 Syam (Talk | contribs) automatically marked revision 18265 of page Parallel I/O introductory tutorial patrolled
- 16:34, 2 September 2021 Ppomorsk (Talk | contribs) deleted page MAPLE (content was: "{{StillNeeded|goblin}} {{Software |package_name=MAPLE |package_description=A sophisticated computer algebra system for symbolic and numerical computing |package_idnumber=126 }} ==Introduction== Maple is a sophisticated computer algebra...")
- 16:00, 2 September 2021 Syam (Talk | contribs) automatically marked revision 18264 of page HPC PROGRAMMING patrolled
- 16:00, 2 September 2021 Syam (Talk | contribs) automatically marked revision 18263 of page HPC PROGRAMMING patrolled
- 16:00, 2 September 2021 Syam (Talk | contribs) automatically marked revision 18262 of page OpenMP patrolled
- 15:59, 2 September 2021 Syam (Talk | contribs) automatically marked revision 18261 of page Main Page patrolled
- 15:59, 2 September 2021 Syam (Talk | contribs) automatically marked revision 18260 of page LINUX SHELL patrolled
- 15:59, 2 September 2021 Syam (Talk | contribs) automatically marked revision 18259 of page Linux and vi Editor Fundamentals patrolled
- 14:34, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Hyper-Q (content before blanking was: "==Overview== Hyper-Q (or MPS) is a new hardware/software feature of NVIDIA GPUs. It is available in GPUs with CUDA capability 3.5 and higher. It is available on P100 and V100 GPUs in the Compute Canada clusters cedar, gr...")
- 14:33, 2 September 2021 Ppomorsk (Talk | contribs) deleted page FAQ: About SHARCNET (content was: "<!--This page is transcluded to the main FAQ page. If you make changes here, make sure the changes show up on the main FAQ page. You may have to make an edit to the main FAQ page to force a refresh. --> == About SHARCNET == === What i...")
- 14:33, 2 September 2021 Ppomorsk (Talk | contribs) deleted page FAQ: Getting an Account with SHARCNET and Related Issues (content was: "<!--This page is transcluded to the main FAQ page. If you make changes here, make sure the changes show up on the main FAQ page. You may have to make an edit to the main FAQ page to force a refresh. --> == Getting an Account with SHARC...")
- 14:33, 2 September 2021 Ppomorsk (Talk | contribs) deleted page FAQ: Getting Help (content was: "<!--This page is transcluded to the main FAQ page. If you make changes here, make sure the changes show up on the main FAQ page. You may have to make an edit to the main FAQ page to force a refresh. --> == Getting Help == === I have...")
- 14:33, 2 September 2021 Ppomorsk (Talk | contribs) deleted page FAQ: Research at SHARCNET (content was: "<!--This page is transcluded to the main FAQ page. If you make changes here, make sure the changes show up on the main FAQ page. You may have to make an edit to the main FAQ page to force a refresh. --> == Research at SHARCNET == ===...")
- 14:32, 2 September 2021 Ppomorsk (Talk | contribs) deleted page FAQ: Contacting SHARCNET (content was: "<!--This page is transcluded to the main FAQ page. If you make changes here, make sure the changes show up on the main FAQ page. You may have to make an edit to the main FAQ page to force a refresh. --> == Contacting SHARCNET == ===...")
- 14:32, 2 September 2021 Ppomorsk (Talk | contribs) deleted page FAQ: What types of research programs / support are provided to the research community? (content was: "<!--This page is transcluded to the main FAQ page. If you make changes here, make sure the changes show up on the main FAQ page. You may have to make an edit to the main FAQ page to force a refresh. --> == What types of research progra...")
- 14:32, 2 September 2021 Ppomorsk (Talk | contribs) deleted page FAQ: How to Acknowledge SHARCNET in Publications (content was: "<!--This page is transcluded to the main FAQ page. If you make changes here, make sure the changes show up on the main FAQ page. You may have to make an edit to the main FAQ page to force a refresh. --> == How to Acknowledge SHARCNET i...")
- 14:29, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Using gnuplot (content was: "=Introduction= Gnuplot is a command-line driven graphing utility that is copyrighted but freely distributed. Designed for efficient and interactive visualization of mathematical functions and data. It has the capacity for generating publ...")
- 14:29, 2 September 2021 Ppomorsk (Talk | contribs) deleted page File:Gnuplot demo 3d hidden surface orca.png
- 14:29, 2 September 2021 Ppomorsk (Talk | contribs) deleted page File:Gnuplot demo 3d surfaces1 orca.png
- 14:29, 2 September 2021 Ppomorsk (Talk | contribs) deleted page File:Gnuplot demo multiaxis orca.png
- 14:28, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Java (content was: "{{Template:CCDelete}} {{Software |package_name=OPENJDK |package_description=Open source implementation of Java SE. |package_idnumber=66 }} {{Template:GrahamUpdate}} =Introduction= Java is a general-purpose, object-oriented language whic...")
- 14:27, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Getting Started (content before blanking was: "==Getting Started== * FAQs * Getting an Account with SHARCNET (online reference) * Attending SHARCNET Webinars (online reference) * Choosing A Password (self-directed tutorial) * SSH|SSH...")
- 14:26, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Templete:CCDelete (content was: "{| cellpadding=5 style="border:4px solid #BF4513" |- bgcolor="#FFF8DC" | This page is scheduled for deletion because it is redundant with information available on t..." (and the only contributor was "Edward"))
- 14:25, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Getting started with Cloud Computing (content was: "{{Template:GrahamUpdate}} =About= Cloud computing is a method of sharing computing resources. While the resources are shared the end user has their own isolated c..." (and the only contributor was "Edward"))
- 14:25, 2 September 2021 Ppomorsk (Talk | contribs) deleted page File:Memory bandwidth graham.png
- 14:25, 2 September 2021 Ppomorsk (Talk | contribs) deleted page File:Zgesv MAGMA 2017 graham.png
- 14:24, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Linear algebra on the GPU (content was: "This online tutorial covers the material contained in the online seminar given in October 2017. The recording is available [https://www.youtube.com/watch?v=7r..." (and the only contributor was "Ppomorsk"))
- 14:21, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Command Line Fundamentals: Unix and Bash (content before blanking was: "==Basic UNIX concepts== *Unix is an operating system, all SHARCNET systems run some variant of Unix (eg. Linux) *Most Unix-based systems have a GUI interface, but the command line offers more complex and abstract interact...")
- 14:21, 2 September 2021 Ppomorsk (Talk | contribs) deleted page GNU Parallel (content before blanking was: "GNU parallel is a shell tool which can be used for executing serial jobs in parallel within one compute node. It will be helpful if a user have many serial (also can be multi-threaded) jobs running in one whole-node job s...")
- 14:20, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Serial farming on Graham (content before blanking was: "Watch this on youtube: https://www.youtube.com/watch?v=49dC4bmBCic = Introduction = == What is serial farming? == “Farming” is running a large number of cluster jobs which are effectively independent of each other bu...")
- 14:20, 2 September 2021 Ppomorsk (Talk | contribs) deleted page META package for serial farming (content before blanking was: "=Overview= META package is a suite of scripts designed in-house to fully automate throughput computing (serial/parallel/GPU farming). They will work on National systems (Graham, Cedar etc), and other clusters which use th...")
- 14:20, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Measuring Parallel Scaling Performance (content before blanking was: "<!--checked2015--> == Parallel Scalability == A common task in HPC is measuring the <i>scalability</i> (also referred to as the <i>scaling efficiency</i>) of an application. This measurement indicates how efficient an a...")
- 14:20, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Parallel Debugging with DDT (content before blanking was: "=Overview of DDT= ==Introduction== The Distributed Debugging Tool (DDT) is a powerful commercial debugger with a graphical user interface (GUI). It’s main intended use is for debugging parallel MPI codes, though it c...")
- 14:20, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Analyzing I/O Performance (content before blanking was: "{{template:LegacyPage}} __TOC__ === Introduction === You should read this knowledge base entry to learn how to best organize their files at SHARCNET. It is common to use...")
- 14:20, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Signal Handling and Checkpointing (content before blanking was: "<!-- Checked 2019 Ed--> == An Overview of Signals == A significant aspect to how an operating system manages multitude asynchronous processes simultaneously is the notion of '''''signals'''''. Signals are the means by w...")
- 14:20, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Getting an Account with SHARCNET (content before blanking was: "At this point a SHARCNET account is no longer required to access Compute Canada systems (including those managed by SHARCNET). These can be accessed using your Compute Canada username and password. You can apply for it...")
- 14:19, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Attending SHARCNET Webinars (content before blanking was: "SHARCNET makes a number of seminar events available online (New User Webinar, general interest talks, etc.) using [https://zoom.us/ Zoom]. Zoom can be used by either installing an app (available for Windows, Mac, Linux et...")
- 14:12, 2 September 2021 Ppomorsk (Talk | contribs) deleted page MATLAB (content was: "{{Template:CCDelete}} {{Software |package_name=MATLAB |package_description= MATLAB |package_idnumber=54 }} ==Introduction== For users at University of Waterloo(UW), Western University(UWO) and McMaster University, special provisions have...")
- 14:10, 2 September 2021 Ppomorsk (Talk | contribs) deleted page GAUSSIAN (content was: "{{Template:CCDelete}} <!--checked2016--> {{Software |package_name=Gaussian |package_description=Chemistry, Electronic Structure Programs |package_idnumber=21 }} ==Introduction== Gaussian 03, 09 and 16 are available on several clusters,...")
- 14:01, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Legacy Systems (content was: "Legacy systems are older systems which are about to be retired, or given a new set of software to make them similar to orca and graham. This page collects all information applicable to these systems. =Systems= Current legacy systems...")
- 14:00, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Globus (content was: "{{Software |package_name=Globus |package_description=Compute Canada portal for fast, secure and reliable data transfer. |package_idnumber=184 }} '''Note''' - P..." (and the only contributor was "Jdesjard"))
- 13:29, 2 September 2021 Syam (Talk | contribs) automatically marked revision 18258 of page Knowledge Base patrolled
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- 12:59, 2 September 2021 Syam (Talk | contribs) automatically marked revision 18229 of page Getting Started patrolled
- 12:58, 2 September 2021 Syam (Talk | contribs) automatically marked revision 18228 of page Serial farming on Graham patrolled
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- 11:29, 2 September 2021 Ppomorsk (Talk | contribs) deleted page PNETCDF (content was: "{{Template:CCDelete}} {{Software |package_name=PNETCDF |package_description=A High Performance API for NetCDF File Access |package_idnumber=75 }} =Introduction= The Parallel-NetCDF library provides high-performance parallel I/O to/from...")
- 11:29, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Dtn (content was: "{{System |cluster_name=dtn |target_usage=Data Transfer |system_idnumber=94 }} {{Template:LegacyPage}} The SHARCNET data transfer node (dtn.sharcnet.ca) is designed for high throughput access to Sharcnet filesystems without having to use...")
- 11:28, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Cryptominisat (content was: "=4.5.3= Releases: https://github.com/msoos/cryptominisat/releases<br> ==Binary== wget https://github.com/msoos/cryptominisat/releases/download/4.5.3/cryptominisat4-elf-static-64b<br> chmod u+x cryptominisat4-elf-static-64b For com...")
- 11:24, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Visualization of 2D and 3D datasets with ParaView (content was: "{{Template:GrahamUpdate}} == Scientific visualization with ParaView == For visualization of 2D and 3D data we highly recommend [http://www.paraview.org ParaVie..." (and the only contributor was "Razoumov"))
- 11:24, 2 September 2021 Ppomorsk (Talk | contribs) deleted page PARAVIEW (content was: "{{Template:CCDelete}} {{Template:GrahamUpdate}} {{Software |package_name=PARAVIEW |package_description=An open-source, multi-platform data analysis and visualization application. |package_idnumber=67 }} <br> =Overview= Sharcnet provides...")
- 11:23, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Visualization in SHARCNET (content was: "==Visualization Hardware And Software== We have a few high-end workstations dedicated for visualization uses, on which several commonly used visualization softw..." (and the only contributor was "Razoumov"))
- 11:22, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Porting CUDA to OpenCL (content was: "<!--checked2016--> The data-parallel programming model in OpenCL shares some commonalities with CUDA programming model, making it relatively straightforward to conv..." (and the only contributor was "Feimao"))
- 11:21, 2 September 2021 Ppomorsk (Talk | contribs) deleted page OPENCL (content was: "'''OpenCL''' is the first open standard for writing programs that can execute across heterogeneous platforms, most importantly both CPUs and GPUs. OpenCL includes a language (based on C) for writing ''kernels'' (functions which can be e...")
- 11:19, 2 September 2021 Ppomorsk (Talk | contribs) deleted page SIESTA (content was: "{{Template:CCMissing}} ==Introduction== {{Software |package_name=SIESTA |package_description=Linear-scaling DFT based on Numerical Atomic Orbitals |package_idnumber=95 }} SIESTA performs self-consistent DFT employing order-N techniques...")
- 11:18, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Using numactl (content was: "<!--checked2016--> '''numactl''' is a utility which can be used to control NUMA policy for processes or shared memory. NUMA (stands for Non-Uniform Memory Access) is a memory architecture in which a given CPU core has variable access sp...")
- 11:16, 2 September 2021 Ppomorsk (Talk | contribs) deleted page CPMD (content was: "{{Template:CCMissing}} {{Software |package_name=CPMD |package_description=Parallelized Plane Wave Implementation of DFT |package_idnumber=61 }} =Introduction= Cpmd is provided so jobs can be run in the mpi queue on sharcnet clusters....")
- 11:15, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Minsky (content was: "Minsky is an IBM S822LC server with dual power8+ chips, 10 cores per socket, 8 SMT (Simultaneous MultiThreading) per core. 4 NVIDIA Pascal P100 GPUs are connected with NVlinks. SSD is equipped as /scratch storage to provide 700GB usable...")
- 11:14, 2 September 2021 Ppomorsk (Talk | contribs) deleted page File:Kernel performance limiter 2.png
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- 11:14, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Profiling with Nsight (content was: "<!--checked2016--> {{Template:GrahamUpdate}} This page will give a brief introduction about how to use Nsight for profiling purpose. =Nsight Eclipse Edition= NVIDI..." (and the only contributor was "Feimao"))
- 16:22, 30 August 2021 Syam (Talk | contribs) automatically marked revision 18224 of page FAQ: Getting Help patrolled
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- 12:58, 17 February 2021 Syam (Talk | contribs) uploaded File:Nixos 2020.pdf (Tyson)
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- 12:53, 17 February 2021 Syam (Talk | contribs) uploaded File:Rapids ongrahamgpus.pdf (Jinhui)
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- 13:29, 8 November 2019 Syam (Talk | contribs) deleted page OPENFOAM (content was: "{{Template:CCDelete}} {{Template:GrahamUpdate}} {{Software |package_name=OPENFOAM |package_description=open source CFD software package |package_idnumber=117 }} ==Introduction== OpenFOAM is a free, open source CFD software package prod...")
- 12:45, 8 November 2019 Syam (Talk | contribs) deleted page Make utility and makefiles (content was: "{{Template:GrahamUpdate}} ===Overview=== The make utility reads a makefile containing instructions on how to compile and link your source files to produce an executable. You can write instructions in the makefile to test environment vari...")
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- 12:38, 8 November 2019 Syam (Talk | contribs) deleted page Serial / parallel farming (or throughput computing) (content was: "{{Template:LegacyPage}} =Introduction= ==Throughput computing / serial and parallel farming== ===Definitions=== Throughput computing is a method for solving computational problems in a short amount of time. The method involves decompos...")
- 12:37, 8 November 2019 Syam (Talk | contribs) deleted page Machine Learning and Data Mining (content was: "=Introduction= This page is intended to serve as a community and information hub for our machine learning/deep learning and data mining users. __TOC__ =Hardwares= ==Graham== [https://docs.computecanada.ca/wiki/Graham GRAHAM] is a hete...")
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- 12:20, 8 November 2019 Syam (Talk | contribs) deleted page Serial code profiling using gprof (content was: "{{Template:LegacyPage}} <!--checked2015--> Serial code profiling is done for two main reasons: * To improve (sometimes dramatically) the efficiency of the serial code, or * As the important first step when converting a serial code to...")
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- 12:34, 25 May 2019 Syam (Talk | contribs) uploaded File:GIS-2019-OpenMP.pdf (Jemmy)
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- 12:49, 16 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17916 of page META package for serial farming patrolled
- 12:43, 16 May 2019 Ppomorsk (Talk | contribs) deleted page New user seminar (content was: "The recorded new user seminar (only covers our legacy systems; not for Graham) is available at the following:<br> https://www.youtube.com/watch?v=p6QNVk8sSjM<br> <br> Register for an online seminar (which is primarily for Graham):<br> ht...")
- 12:40, 16 May 2019 Ppomorsk (Talk | contribs) deleted page EMBOSS (content was: "{{Template:LegacyPage}} <!--checked2016--> In order to install EMBOSS in one's user environment on SHARCNet systems the package needs to be placed in the SHARCNet file systems, unpacked, installed and then user's PATH needs to be modifie...")
- 12:36, 16 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17915 of page HPC PROGRAMMING patrolled
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- 12:22, 16 May 2019 Ppomorsk (Talk | contribs) deleted page Domain Portals (content was: "==Domain portals== Here we provide some additional information for SHARCNET users from the following areas: * Machine Learning and Data Mining * Computational Fluid Dynamics")
- 12:22, 16 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17910 of page Main Page patrolled
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- 13:46, 15 May 2019 Ppomorsk (Talk | contribs) deleted page Specifying Resource Requirements (content was: "{{Template:GrahamUpdate}} Graph 1 : Memory request utilization on Orca in 2012 Image:orca_runtime.png|400px|thumbnail|right|alt=Runtime estimate vs...")
- 13:43, 15 May 2019 Ppomorsk (Talk | contribs) deleted page Chemistry and Biochemistry (content was: "#REDIRECT Chemistry, Biochemistry and Biophysics" (and the only contributor was "Jemmyhu"))
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- 13:05, 15 May 2019 Ppomorsk (Talk | contribs) deleted page Bioinformatics (content was: "<!--checked2016--> =Introduction= This page is intended to serve as a community and information hub for our bioinformatics users. It is our hope that interested users and staff share tips and tricks, information about what their groups...")
- 13:05, 15 May 2019 Ppomorsk (Talk | contribs) deleted page Chemistry, Biochemistry and Biophysics (content was: "{{Template:GrahamUpdate}} ==Introduction== This page is intended to serve as a community and information hub for our computational chemistry, biochemistry and bi..." (and the only contributor was "Jemmyhu"))
- 13:05, 15 May 2019 Ppomorsk (Talk | contribs) deleted page Astrophysics Portal (content was: "{{Template:GrahamUpdate}} =Introduction= This page is intended to serve as a community and information hub for our computational astrophysics users. It is our hope that users and staff who are astrophysics savvy will be able to share...")
- 12:04, 15 May 2019 Ppomorsk (Talk | contribs) deleted page Astrophysics/FLASH3 (content was: "{{Template:Outdated}} This page is for an old (circa 2011) project. ==FLASH3 project== On Saw FLASH2.5: /work/kirshdr/FLASH2.5/ FLASH3.3: /work/kirshdr/FLASH3.3/ == gas drag == 2.5/source/particles/active/short_range/ShortRangeFo...")
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- 12:34, 14 May 2019 Ppomorsk (Talk | contribs) deleted page Google Test (content was: "=Software Information= Google Test is Google's C++ test framework. * URL: https://github.com/google/googletest =Foreword= The following installation instructions are based on work done in [https://www.sharcnet.ca/my/problems/ticket/2...")
- 12:33, 14 May 2019 Ppomorsk (Talk | contribs) deleted page QD (content was: "{{Software |package_name=QD |package_description=A package that supports a double-double datatype with about 32 decimal digits |package_idnumber=11 }} =Introduction= QD is a library supporting quadruple precision. SHARCNET provides this...")
- 12:31, 14 May 2019 Ppomorsk (Talk | contribs) deleted page DDT (there is a DDT page on CC wiki with this content)
- 12:30, 14 May 2019 Ppomorsk (Talk | contribs) deleted page ASE (content was: "= steps to install ASE in your own space = 1. Installation, take a look at how to use pip at Sharcnet https://www.sharcnet.ca/help/index.php/Python#Using_pip I..." (and the only contributor was "Jemmyhu"))
- 12:30, 14 May 2019 Ppomorsk (Talk | contribs) deleted page DAR (content was: "{{Software |package_name=dar |package_description=A shell command to back up directory trees and files |package_idnumber=140 }} =Introduction= Dar is a shell command that backs up directory trees and files, taking care of hard links, E...")
- 12:29, 14 May 2019 Ppomorsk (Talk | contribs) deleted page ARPACK-NG (content was: "{{Software |package_name=ARPACK-NG |package_description=a collection of Fortran77 subroutines to solve eigenvalue problems |package_idnumber=112 }} =Introduction= ARPACK is a collection of Fortran77 subroutines designed to solve large s...")
- 12:28, 14 May 2019 Ppomorsk (Talk | contribs) deleted page BIOPERLRUN (content was: "{{Software |package_name=BIOPERLRUN |package_description=Provides a suite bioperlrun wrapper interface modules to various bioinformatics applications. |package_id..." (and the only contributor was "Roberpj"))
- 12:25, 14 May 2019 Ppomorsk (Talk | contribs) deleted page AMICA (content was: "<big>'''AMICA''' is an "Code for AMICA: Adaptive Mixture ICA with shared components". (Page created & building steps tested by Paul Preney on Dec. 9, 2016.) ==Building AMICA on Graham== To build AMICA on Graham (tested Aug. 30, 2017):...")
- 12:22, 14 May 2019 Ppomorsk (Talk | contribs) deleted page BIO-SAMTOOLS (content was: "{{Template:GrahamUpdate}} =1.38= Tested on orca running centos 6.4 by doug@sharcnet.ca on Jul29, 2013. Step 1) Prepare environment ... <pre> cd ~/ module purge all /bin/rm -rf .cpan perl5 (optional) export PERL5LIB=/home/$USER/perl5/li...")
- 12:18, 14 May 2019 Ppomorsk (Talk | contribs) deleted page TopHat (content was: "<big>'''TopHat''' is a fast splice junction mapper for RNA-Seq reads. ==Tophat installation on new Compute Canada systems (cedar and graham)== wget https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz tar xvfz tophat-2.1...")
- 12:17, 14 May 2019 Ppomorsk (Talk | contribs) deleted page PopAlu (content was: "{{Template:LegacyPage}} =Software Information= PopAlu is an open source C++ project: * URL: https://github.com/aimeida/PopAlu =Foreword= The following installation instructions are based on work done in [https://www.sharcnet.ca/my/pr...")
- 11:50, 14 May 2019 Ppomorsk (Talk | contribs) deleted page LSPREPOST (content was: "{{Software |package_name=LSPREPOST |package_description=Pre and Post processor for ls-dyna. |package_idnumber=155 }} =Introduction= LS-PrePost is an advanced in..." (and the only contributor was "Roberpj"))
- 11:47, 14 May 2019 Ppomorsk (Talk | contribs) deleted page SAMTOOLS (content was: "{{Software |package_name=SAMTOOLS |package_description=Sequence Alignment/Map generic format for storing large nucleotide sequence alignments. |package_idnumber=163 }} =Introduction= SAM (Sequence Alignment/Map) is a flexible generic fo...")
- 16:33, 13 May 2019 Ppomorsk (Talk | contribs) deleted page VMD (content was: "{{Software |package_name=VMD |package_description=Program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scri..." (and the only contributor was "Roberpj"))
- 16:32, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Dice (content was: "=0.9= * NOTE: The Dice web site is here: https://sanshar.github.io/Dice/ Tested on orca running centos 6.8 by preney@sharcnet.ca on June 6, 2017.<br> 1) Download Instructions <pre>cd $HOME mkdir build cd build # Download DICE: wget ht...")
- 16:31, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Dedicated Programming Support Projects (content was: "#REDIRECT Code Repositories")
- 16:30, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Ssh for Windows Users (content was: "#REDIRECTSSH#Windows" (and the only contributor was "Ppomorsk"))
- 16:29, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Genome-wide Prediction of Mutant Single Nucleotide Polymorphisms based on Shannon Information Theory (moved to staff wiki)
- 16:28, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Individual-based Model of Forest Dynamics to Study Global Ecological Change (moved to staff wiki)
- 16:23, 13 May 2019 Ppomorsk (Talk | contribs) deleted page International summer school (content was: "[http://summerschool.niif.hu/ ISS 2014] - International Summer School 2014 June 01 to 06, 2014, Budapest SHARCNET attendee: Tyson Whitehead Other Compute Canada attendees: Jonathan Ferland = Talks = == Exascale == * good intro talk...")
- 16:21, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Managing your files effectively at SHARCNET with SVN (content was: "#REDIRECT Webinar 2014 Managing your files effectively at SHARCNET with SVN" (and the only contributor was "Edward"))
- 16:21, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Introduction for Linux Abstract (content was: "#REDIRECT Webinar 2013 Introduction for Linux Abstract" (and the only contributor was "Ppomorsk"))
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- 16:20, 13 May 2019 Ppomorsk (Talk | contribs) moved page Introduction for Linux Abstract to Webinar 2013 Introduction for Linux Abstract
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- 16:15, 13 May 2019 Ppomorsk (Talk | contribs) deleted page The Benefits of GLOST for Many Jobs (content was: "#REDIRECT Webinar 2018 The Benefits of GLOST for Many Jobs" (and the only contributor was "Ppomorsk"))
- 16:12, 13 May 2019 Ppomorsk (Talk | contribs) deleted page All about job wait times in the Graham queue (content was: "#REDIRECT Webinar 2018 All about job wait times in the Graham queue" (and the only contributor was "Ppomorsk"))
- 16:12, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Using Computational Chemistry software effectively on Graham (content was: "#REDIRECT Webinar 2018 Using Computational Chemistry software effectively on Graham" (and the only contributor was "Ppomorsk"))
- 16:12, 13 May 2019 Ppomorsk (Talk | contribs) moved page Using Computational Chemistry software effectively on Graham to Webinar 2018 Using Computational Chemistry software effectively on Graham
- 16:12, 13 May 2019 Ppomorsk (Talk | contribs) moved page All about job wait times in the Graham queue to Webinar 2018 All about job wait times in the Graham queue
- 16:10, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Fundamentals of working at the command line at Graham (content was: "#REDIRECT Webinar 2018 Fundamentals of working at the command line at Graham" (and the only contributor was "Ppomorsk"))
- 16:10, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Debugging on Graham with DDT (content was: "#REDIRECT Webinar 2018 Debugging on Graham with DDT" (and the only contributor was "Ppomorsk"))
- 16:10, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Introduction to MySQL on Graham (content was: "#REDIRECT Webinar 2018 Introduction to MySQL on Graham" (and the only contributor was "Ppomorsk"))
- 16:10, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Harnessing the Power of Heterogeneous Computing using Boost.Compute + OpenCL (content was: "#REDIRECT Webinar 2018 Harnessing the Power of Heterogeneous Computing using Boost.Compute + OpenCL" (and the only contributor was "Ppomorsk"))
- 16:10, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Concurrent File I/O by Multiple Processes (content was: "#REDIRECT Webinar 2018 Concurrent File I/O by Multiple Processes" (and the only contributor was "Ppomorsk"))
- 16:09, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Understand (and potentially reduce) job wait times (content was: "#REDIRECT Webinar 2018 Understand (and potentially reduce) job wait times" (and the only contributor was "Ppomorsk"))
- 16:09, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Using MATLAB effectively on Graham and Cedar (content was: "#REDIRECT Webinar 2018 Using MATLAB effectively on Graham and Cedar" (and the only contributor was "Ppomorsk"))
- 16:09, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MySQL Part 2: Relations and Joins (content was: "#REDIRECT Webinar 2018 MySQL Part 2: Relations and Joins" (and the only contributor was "Ppomorsk"))
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- 16:07, 13 May 2019 Ppomorsk (Talk | contribs) moved page MySQL Part 2: Relations and Joins to Webinar 2018 MySQL Part 2: Relations and Joins
- 16:07, 13 May 2019 Ppomorsk (Talk | contribs) moved page Using MATLAB effectively on Graham and Cedar to Webinar 2018 Using MATLAB effectively on Graham and Cedar
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Stock Prediction Using Recurrent Neural Network to Webinar 2018 Stock Prediction Using Recurrent Neural Network
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Understand (and potentially reduce) job wait times to Webinar 2018 Understand (and potentially reduce) job wait times
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page The Benefits of GLOST for Many Jobs to Webinar 2018 The Benefits of GLOST for Many Jobs
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Concurrent File I/O by Multiple Processes to Webinar 2018 Concurrent File I/O by Multiple Processes
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Harnessing the Power of Heterogeneous Computing using Boost.Compute + OpenCL to Webinar 2018 Harnessing the Power of Heterogeneous Computing using Boost.Compute + OpenCL
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Introduction to MySQL on Graham to Webinar 2018 Introduction to MySQL on Graham
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Debugging on Graham with DDT to Webinar 2018 Debugging on Graham with DDT
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Fundamentals of working at the command line at Graham to Webinar 2018 Fundamentals of working at the command line at Graham
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Using Pseudorandom Number Sequences in C++ to Webinar 2018 Using Pseudorandom Number Sequences in C++
- 16:05, 13 May 2019 Ppomorsk (Talk | contribs) moved page Code profiling on Graham to Webinar 2018 Code profiling on Graham
- 16:04, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Dipping into C++17 Parallel Algorithms with Intel's Parallel STL (content was: "#REDIRECT Webinar 2019 Dipping into C++17 Parallel Algorithms with Intel's Parallel STL" (and the only contributor was "Ppomorsk"))
- 16:04, 13 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17854 of page Online Seminars patrolled
- 16:04, 13 May 2019 Ppomorsk (Talk | contribs) deleted page The Monad Understanding Hurdle (content was: "#REDIRECT Webinar 2019 The Monad Understanding Hurdle" (and the only contributor was "Ppomorsk"))
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- 16:03, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Introduction to parallel programming with MPI and Python (content was: "#REDIRECT Webinar 2019 Introduction to parallel programming with MPI and Python" (and the only contributor was "Ppomorsk"))
- 16:03, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Exploring Octave package dataframe (content was: "#REDIRECT Webinar 2019 Exploring Octave package dataframe" (and the only contributor was "Ppomorsk"))
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- 16:02, 13 May 2019 Ppomorsk (Talk | contribs) moved page What Happened To My Job? to Webinar 2019 What Happened To My Job?
- 16:02, 13 May 2019 Ppomorsk (Talk | contribs) moved page Dipping into C++17 Parallel Algorithms with Intel's Parallel STL to Webinar 2019 Dipping into C++17 Parallel Algorithms with Intel's Parallel STL
- 16:02, 13 May 2019 Ppomorsk (Talk | contribs) moved page Introduction to parallel programming with MPI and Python to Webinar 2019 Introduction to parallel programming with MPI and Python
- 16:01, 13 May 2019 Ppomorsk (Talk | contribs) moved page Exploring Octave package dataframe to Webinar 2019 Exploring Octave package dataframe
- 16:01, 13 May 2019 Ppomorsk (Talk | contribs) moved page PRE and POST production on Graham to Webinar 2019 PRE and POST production on Graham
- 13:37, 13 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17838 of page GPU Accelerated Computing patrolled
- 13:34, 13 May 2019 Ppomorsk (Talk | contribs) deleted page CONVERGE (content was: "{{Software |package_name=CONVERGE |package_description=CFD Code Using the AMR Mesh Generation Technique |package_idnumber=154 }} =Introduction= A converge module is made available on sharcnet to run large jobs in the mpi queue. =Versi...")
- 13:33, 13 May 2019 Ppomorsk (Talk | contribs) deleted page CaMa-Flood (content was: "{{Template:GrahamUpdate}} The CaMa-Flood (Catchment-based Macro-scale Floodplain) model is designed to simulate the hydrodynamics in continental-scale rivers. ==CaMa-Flood v3.6.2 installation guide== To build this software on SHARCNET,...")
- 13:33, 13 May 2019 Ppomorsk (Talk | contribs) deleted page CPAN (content was: "{{Template:LegacyPage}} {{Software |package_name=CPAN |package_description=The Comprehensive Perl Archive Network|package_idnumber=169 }} =Introduction= A meta module providing an updated version of the Cpan shell. =Version Selection=...")
- 13:32, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Caret (content was: "=6.0.78= Below steps tested on orca running centos 6.9 by doug@sharcnet.ca on Feb 21, 2018.<br> <pre> ssh orca.sharcnet.ca [roberpj@orc-login1:~] ssh orc-dev3..." (and the only contributor was "Roberpj"))
- 13:30, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Programming Xeon Phi (content was: " =The Architecture= Xeon Phi is the first Intel Many Integrated Core (MIC) architecture product that combines many Intel CPU cores onto a single chip. The Xeon Phi co-processor can be considered as an on-chip computing node which has 60(...")
- 13:29, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Pyomo (content was: "== Introduction == Pyomo is a Python-based open-source software package that supports a diverse set of optimization capabilities for formulating, solving, and an..." (and the only contributor was "Jnandez"))
- 13:29, 13 May 2019 Ppomorsk (Talk | contribs) deleted page NWCHEM (content was: "{{Software |package_name=NWCHEM |package_description=A computational chemistry package |package_idnumber=12 }} ==Introduction== NWChem is a computational chemistry package that is designed to run on high-performance parallel supercompute...")
- 13:28, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MPFUN (content was: "{{Template:LegacyPage}} {{Software |package_name=MPFUN |package_description=A Fortran-90 arbitrary precision package |package_idnumber=16 }} ===Introduction=== MPFUN90 is a Fortran-90 arbitrary precision package (i.e. user specifies the...")
- 13:28, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MODE (content was: "{{Template:LegacyPage}} {{Software |package_name=MODE |package_description=Lumerical MODE provides tools for guided and eigenmode expansion (EME) solver |package_idnumber=162 }} =Introduction= Provides mode software for use by research...")
- 13:27, 13 May 2019 Ppomorsk (Talk | contribs) deleted page TRINITY (content was: "<!--checked2016--> {{Template:GrahamUpdate}} =2.0.6= This document provides test and build instructions for http://trinityrnaseq.github.io/ provided by doug@sharcnet.ca 17jun2015: 1) Demonstrate howto use the 'unsupported' sharcnet bui...")
- 13:27, 13 May 2019 Ppomorsk (Talk | contribs) deleted page PETSC SLEPC (content was: "<!--checked2016--> {{Software |package_name=PETSC_SLEPC |package_description=A suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations |package_idnum...")
- 13:26, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Pymol (content was: "{{GrahamUpdate}} ==Pymol on new Compute Canada systems (cedar and graham)== Pymol can be installed through Anaconda (see [https://docs.computecanada.ca/wiki/Anaconda/en Anaconda page] on docs.computecanada.ca for more details). First,...")
- 13:25, 13 May 2019 Ppomorsk (Talk | contribs) deleted page PARI/GP (content was: "{{Software |package_name=PARI/GP |package_description=A computer algebra system designed for fast computations in number theory |package_idnumber=93 }} <b>Introduction</b> Please note PARI/GP is a package installed as part of the opera...")
- 13:24, 13 May 2019 Ppomorsk (Talk | contribs) deleted page LLVM (content was: "{{Software |package_name=LLVM |package_description=The LLVM Compiler Project with Sub-Projects Clang,Openmp,Polly |package_idnumber=185 }} =Version Selection= <..." (and the only contributor was "Roberpj"))
- 13:24, 13 May 2019 Ppomorsk (Talk | contribs) deleted page JULIA (content was: "{{Template:GrahamUpdate}} {{stub}} =versions and installation= ==0.6.2== The following two commands will (1) download the Julia binary from the website (julialang.org) as a tar file, and (2) extract the tar file. The target directory...")
- 13:22, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Winsshfs (content was: "#REDIRECT SSHFS" (and the only contributor was "Edward"))
- 13:22, 13 May 2019 Ppomorsk (Talk | contribs) deleted page YT (content was: "{{Template:GrahamUpdate}} {{Software |package_name=Yt |package_description=Visualization |package_idnumber=151 }} ==Introduction== The yt project is a Python package for analyzing and visualizing volumetric, multi-resolution astrophysic...")
- 13:22, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Yambo (content was: "{{Template:GrahamUpdate}} Jemmy Hu, Oct. 18, 2016 Steps to build Yambo on Sharcnet 1) using the default the environment settings [jemmyhu@saw-login1:~/work/software/yambo/4.0.4] module list Currently Loaded Modulefiles: 1) torque/...")
- 13:21, 13 May 2019 Ppomorsk (Talk | contribs) deleted page XCRYSDEN (content was: "{{Software |package_name=XCRYSDEN |package_description=Visualization software |package_idnumber=94 }} = XCrySDen on Cedar and Graham= On cedar and graham XCrySDen is installed as a module. To use it, connect with the graphical interfa...")
- 13:20, 13 May 2019 Ppomorsk (Talk | contribs) deleted page SeqAn (content was: "{{Template:GrahamUpdate}} =Software Information= SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. * URL: http://www.seqan.de/ * Downloads:...")
- 13:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page ILOGCPLEX (content was: "{{Template:GrahamUpdate}} {{Software |package_name=ILOGCPLEX |package_description=A component of IBM ILOG CPLEX Optimization Studio |package_idnumber=109 }} =Introduction= Users must join first the <i>ilogcplex</i> group before the sof...")