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(newest | oldest) View (newer 500 | older 500) (20 | 50 | 100 | 250 | 500)- 14:29, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Using gnuplot (content was: "=Introduction= Gnuplot is a command-line driven graphing utility that is copyrighted but freely distributed. Designed for efficient and interactive visualization of mathematical functions and data. It has the capacity for generating publ...")
- 14:29, 2 September 2021 Ppomorsk (Talk | contribs) deleted page File:Gnuplot demo 3d hidden surface orca.png
- 14:29, 2 September 2021 Ppomorsk (Talk | contribs) deleted page File:Gnuplot demo 3d surfaces1 orca.png
- 14:29, 2 September 2021 Ppomorsk (Talk | contribs) deleted page File:Gnuplot demo multiaxis orca.png
- 14:28, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Java (content was: "{{Template:CCDelete}} {{Software |package_name=OPENJDK |package_description=Open source implementation of Java SE. |package_idnumber=66 }} {{Template:GrahamUpdate}} =Introduction= Java is a general-purpose, object-oriented language whic...")
- 14:27, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Getting Started (content before blanking was: "==Getting Started== * FAQs * Getting an Account with SHARCNET (online reference) * Attending SHARCNET Webinars (online reference) * Choosing A Password (self-directed tutorial) * SSH|SSH...")
- 14:26, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Templete:CCDelete (content was: "{| cellpadding=5 style="border:4px solid #BF4513" |- bgcolor="#FFF8DC" | This page is scheduled for deletion because it is redundant with information available on t..." (and the only contributor was "Edward"))
- 14:25, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Getting started with Cloud Computing (content was: "{{Template:GrahamUpdate}} =About= Cloud computing is a method of sharing computing resources. While the resources are shared the end user has their own isolated c..." (and the only contributor was "Edward"))
- 14:25, 2 September 2021 Ppomorsk (Talk | contribs) deleted page File:Memory bandwidth graham.png
- 14:25, 2 September 2021 Ppomorsk (Talk | contribs) deleted page File:Zgesv MAGMA 2017 graham.png
- 14:24, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Linear algebra on the GPU (content was: "This online tutorial covers the material contained in the online seminar given in October 2017. The recording is available [https://www.youtube.com/watch?v=7r..." (and the only contributor was "Ppomorsk"))
- 14:21, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Command Line Fundamentals: Unix and Bash (content before blanking was: "==Basic UNIX concepts== *Unix is an operating system, all SHARCNET systems run some variant of Unix (eg. Linux) *Most Unix-based systems have a GUI interface, but the command line offers more complex and abstract interact...")
- 14:21, 2 September 2021 Ppomorsk (Talk | contribs) deleted page GNU Parallel (content before blanking was: "GNU parallel is a shell tool which can be used for executing serial jobs in parallel within one compute node. It will be helpful if a user have many serial (also can be multi-threaded) jobs running in one whole-node job s...")
- 14:20, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Serial farming on Graham (content before blanking was: "Watch this on youtube: https://www.youtube.com/watch?v=49dC4bmBCic = Introduction = == What is serial farming? == “Farming” is running a large number of cluster jobs which are effectively independent of each other bu...")
- 14:20, 2 September 2021 Ppomorsk (Talk | contribs) deleted page META package for serial farming (content before blanking was: "=Overview= META package is a suite of scripts designed in-house to fully automate throughput computing (serial/parallel/GPU farming). They will work on National systems (Graham, Cedar etc), and other clusters which use th...")
- 14:20, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Measuring Parallel Scaling Performance (content before blanking was: "<!--checked2015--> == Parallel Scalability == A common task in HPC is measuring the <i>scalability</i> (also referred to as the <i>scaling efficiency</i>) of an application. This measurement indicates how efficient an a...")
- 14:20, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Parallel Debugging with DDT (content before blanking was: "=Overview of DDT= ==Introduction== The Distributed Debugging Tool (DDT) is a powerful commercial debugger with a graphical user interface (GUI). It’s main intended use is for debugging parallel MPI codes, though it c...")
- 14:20, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Analyzing I/O Performance (content before blanking was: "{{template:LegacyPage}} __TOC__ === Introduction === You should read this knowledge base entry to learn how to best organize their files at SHARCNET. It is common to use...")
- 14:20, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Signal Handling and Checkpointing (content before blanking was: "<!-- Checked 2019 Ed--> == An Overview of Signals == A significant aspect to how an operating system manages multitude asynchronous processes simultaneously is the notion of '''''signals'''''. Signals are the means by w...")
- 14:20, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Getting an Account with SHARCNET (content before blanking was: "At this point a SHARCNET account is no longer required to access Compute Canada systems (including those managed by SHARCNET). These can be accessed using your Compute Canada username and password. You can apply for it...")
- 14:19, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Attending SHARCNET Webinars (content before blanking was: "SHARCNET makes a number of seminar events available online (New User Webinar, general interest talks, etc.) using [https://zoom.us/ Zoom]. Zoom can be used by either installing an app (available for Windows, Mac, Linux et...")
- 14:12, 2 September 2021 Ppomorsk (Talk | contribs) deleted page MATLAB (content was: "{{Template:CCDelete}} {{Software |package_name=MATLAB |package_description= MATLAB |package_idnumber=54 }} ==Introduction== For users at University of Waterloo(UW), Western University(UWO) and McMaster University, special provisions have...")
- 14:10, 2 September 2021 Ppomorsk (Talk | contribs) deleted page GAUSSIAN (content was: "{{Template:CCDelete}} <!--checked2016--> {{Software |package_name=Gaussian |package_description=Chemistry, Electronic Structure Programs |package_idnumber=21 }} ==Introduction== Gaussian 03, 09 and 16 are available on several clusters,...")
- 14:01, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Legacy Systems (content was: "Legacy systems are older systems which are about to be retired, or given a new set of software to make them similar to orca and graham. This page collects all information applicable to these systems. =Systems= Current legacy systems...")
- 14:00, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Globus (content was: "{{Software |package_name=Globus |package_description=Compute Canada portal for fast, secure and reliable data transfer. |package_idnumber=184 }} '''Note''' - P..." (and the only contributor was "Jdesjard"))
- 13:29, 2 September 2021 Syam (Talk | contribs) automatically marked revision 18258 of page Knowledge Base patrolled
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- 12:58, 2 September 2021 Syam (Talk | contribs) automatically marked revision 18228 of page Serial farming on Graham patrolled
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- 11:29, 2 September 2021 Ppomorsk (Talk | contribs) deleted page PNETCDF (content was: "{{Template:CCDelete}} {{Software |package_name=PNETCDF |package_description=A High Performance API for NetCDF File Access |package_idnumber=75 }} =Introduction= The Parallel-NetCDF library provides high-performance parallel I/O to/from...")
- 11:29, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Dtn (content was: "{{System |cluster_name=dtn |target_usage=Data Transfer |system_idnumber=94 }} {{Template:LegacyPage}} The SHARCNET data transfer node (dtn.sharcnet.ca) is designed for high throughput access to Sharcnet filesystems without having to use...")
- 11:28, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Cryptominisat (content was: "=4.5.3= Releases: https://github.com/msoos/cryptominisat/releases<br> ==Binary== wget https://github.com/msoos/cryptominisat/releases/download/4.5.3/cryptominisat4-elf-static-64b<br> chmod u+x cryptominisat4-elf-static-64b For com...")
- 11:24, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Visualization of 2D and 3D datasets with ParaView (content was: "{{Template:GrahamUpdate}} == Scientific visualization with ParaView == For visualization of 2D and 3D data we highly recommend [http://www.paraview.org ParaVie..." (and the only contributor was "Razoumov"))
- 11:24, 2 September 2021 Ppomorsk (Talk | contribs) deleted page PARAVIEW (content was: "{{Template:CCDelete}} {{Template:GrahamUpdate}} {{Software |package_name=PARAVIEW |package_description=An open-source, multi-platform data analysis and visualization application. |package_idnumber=67 }} <br> =Overview= Sharcnet provides...")
- 11:23, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Visualization in SHARCNET (content was: "==Visualization Hardware And Software== We have a few high-end workstations dedicated for visualization uses, on which several commonly used visualization softw..." (and the only contributor was "Razoumov"))
- 11:22, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Porting CUDA to OpenCL (content was: "<!--checked2016--> The data-parallel programming model in OpenCL shares some commonalities with CUDA programming model, making it relatively straightforward to conv..." (and the only contributor was "Feimao"))
- 11:21, 2 September 2021 Ppomorsk (Talk | contribs) deleted page OPENCL (content was: "'''OpenCL''' is the first open standard for writing programs that can execute across heterogeneous platforms, most importantly both CPUs and GPUs. OpenCL includes a language (based on C) for writing ''kernels'' (functions which can be e...")
- 11:19, 2 September 2021 Ppomorsk (Talk | contribs) deleted page SIESTA (content was: "{{Template:CCMissing}} ==Introduction== {{Software |package_name=SIESTA |package_description=Linear-scaling DFT based on Numerical Atomic Orbitals |package_idnumber=95 }} SIESTA performs self-consistent DFT employing order-N techniques...")
- 11:18, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Using numactl (content was: "<!--checked2016--> '''numactl''' is a utility which can be used to control NUMA policy for processes or shared memory. NUMA (stands for Non-Uniform Memory Access) is a memory architecture in which a given CPU core has variable access sp...")
- 11:16, 2 September 2021 Ppomorsk (Talk | contribs) deleted page CPMD (content was: "{{Template:CCMissing}} {{Software |package_name=CPMD |package_description=Parallelized Plane Wave Implementation of DFT |package_idnumber=61 }} =Introduction= Cpmd is provided so jobs can be run in the mpi queue on sharcnet clusters....")
- 11:15, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Minsky (content was: "Minsky is an IBM S822LC server with dual power8+ chips, 10 cores per socket, 8 SMT (Simultaneous MultiThreading) per core. 4 NVIDIA Pascal P100 GPUs are connected with NVlinks. SSD is equipped as /scratch storage to provide 700GB usable...")
- 11:14, 2 September 2021 Ppomorsk (Talk | contribs) deleted page File:Kernel performance limiter 2.png
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- 11:14, 2 September 2021 Ppomorsk (Talk | contribs) deleted page Profiling with Nsight (content was: "<!--checked2016--> {{Template:GrahamUpdate}} This page will give a brief introduction about how to use Nsight for profiling purpose. =Nsight Eclipse Edition= NVIDI..." (and the only contributor was "Feimao"))
- 16:22, 30 August 2021 Syam (Talk | contribs) automatically marked revision 18224 of page FAQ: Getting Help patrolled
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- 12:58, 17 February 2021 Syam (Talk | contribs) uploaded File:Nixos 2020.pdf (Tyson)
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- 12:53, 17 February 2021 Syam (Talk | contribs) uploaded File:Rapids ongrahamgpus.pdf (Jinhui)
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- 13:29, 8 November 2019 Syam (Talk | contribs) deleted page Computational Fluid Dynamics (content was: "=Introduction= This page is intended to serve as a community and information hub for our computational fluid dynamics users. It is our hope that users and staff whoever will be able to share tips and tricks, information about what thei...")
- 13:29, 8 November 2019 Syam (Talk | contribs) deleted page OPENFOAM (content was: "{{Template:CCDelete}} {{Template:GrahamUpdate}} {{Software |package_name=OPENFOAM |package_description=open source CFD software package |package_idnumber=117 }} ==Introduction== OpenFOAM is a free, open source CFD software package prod...")
- 12:45, 8 November 2019 Syam (Talk | contribs) deleted page Make utility and makefiles (content was: "{{Template:GrahamUpdate}} ===Overview=== The make utility reads a makefile containing instructions on how to compile and link your source files to produce an executable. You can write instructions in the makefile to test environment vari...")
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- 12:38, 8 November 2019 Syam (Talk | contribs) deleted page Serial / parallel farming (or throughput computing) (content was: "{{Template:LegacyPage}} =Introduction= ==Throughput computing / serial and parallel farming== ===Definitions=== Throughput computing is a method for solving computational problems in a short amount of time. The method involves decompos...")
- 12:37, 8 November 2019 Syam (Talk | contribs) deleted page Machine Learning and Data Mining (content was: "=Introduction= This page is intended to serve as a community and information hub for our machine learning/deep learning and data mining users. __TOC__ =Hardwares= ==Graham== [https://docs.computecanada.ca/wiki/Graham GRAHAM] is a hete...")
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- 12:20, 8 November 2019 Syam (Talk | contribs) deleted page Serial code profiling using gprof (content was: "{{Template:LegacyPage}} <!--checked2015--> Serial code profiling is done for two main reasons: * To improve (sometimes dramatically) the efficiency of the serial code, or * As the important first step when converting a serial code to...")
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- 11:55, 8 November 2019 Syam (Talk | contribs) deleted page Serial farming and Monte Carlo for SHARCNET (content was: "{{GrahamUpdate}} =What is serial farming, and who needs it?= Serial farming is solving a computational (research, engineering etc.) problem by running a bunch of serial jobs on a cluster. You need serial farming, if your problem belongs...")
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- 11:28, 8 November 2019 Syam (Talk | contribs) deleted page K20 (content was: "'''This page is mostly outdated, as newer and more powerful Pascal GPUs are now available across Compute Canada (in Graham, Cedar etc.).''' = Availability = == SHARCNET == [https://www.sharcnet.ca/my/systems/show/106 Mosaic], 20 nodes,...")
- 17:34, 7 November 2019 Syam (Talk | contribs) automatically marked revision 18025 of page Online Seminars patrolled
- 17:34, 7 November 2019 Syam (Talk | contribs) uploaded File:Leveraging HPC for Machine Learning.pdf (Weiguang)
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- 16:59, 6 November 2019 Ppomorsk (Talk | contribs) deleted page Globus (the page on CC wiki is better)
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- 16:13, 6 August 2019 Ppomorsk (Talk | contribs) deleted page Panda-qiime (content was: "{{Template:CCDelete}} =Qiime, PANDAseq & USearch= QIIME (canonically pronounced chime) stands for Quantitative Insights Into Microbial Ecology, is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA seq...")
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- 12:34, 25 May 2019 Syam (Talk | contribs) uploaded File:GIS-2019-OpenMP.pdf (Jemmy)
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- 12:43, 16 May 2019 Ppomorsk (Talk | contribs) deleted page New user seminar (content was: "The recorded new user seminar (only covers our legacy systems; not for Graham) is available at the following:<br> https://www.youtube.com/watch?v=p6QNVk8sSjM<br> <br> Register for an online seminar (which is primarily for Graham):<br> ht...")
- 12:40, 16 May 2019 Ppomorsk (Talk | contribs) deleted page EMBOSS (content was: "{{Template:LegacyPage}} <!--checked2016--> In order to install EMBOSS in one's user environment on SHARCNet systems the package needs to be placed in the SHARCNet file systems, unpacked, installed and then user's PATH needs to be modifie...")
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- 13:05, 15 May 2019 Ppomorsk (Talk | contribs) deleted page Chemistry, Biochemistry and Biophysics (content was: "{{Template:GrahamUpdate}} ==Introduction== This page is intended to serve as a community and information hub for our computational chemistry, biochemistry and bi..." (and the only contributor was "Jemmyhu"))
- 13:05, 15 May 2019 Ppomorsk (Talk | contribs) deleted page Astrophysics Portal (content was: "{{Template:GrahamUpdate}} =Introduction= This page is intended to serve as a community and information hub for our computational astrophysics users. It is our hope that users and staff who are astrophysics savvy will be able to share...")
- 12:04, 15 May 2019 Ppomorsk (Talk | contribs) deleted page Astrophysics/FLASH3 (content was: "{{Template:Outdated}} This page is for an old (circa 2011) project. ==FLASH3 project== On Saw FLASH2.5: /work/kirshdr/FLASH2.5/ FLASH3.3: /work/kirshdr/FLASH3.3/ == gas drag == 2.5/source/particles/active/short_range/ShortRangeFo...")
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- 12:34, 14 May 2019 Ppomorsk (Talk | contribs) deleted page Google Test (content was: "=Software Information= Google Test is Google's C++ test framework. * URL: https://github.com/google/googletest =Foreword= The following installation instructions are based on work done in [https://www.sharcnet.ca/my/problems/ticket/2...")
- 12:33, 14 May 2019 Ppomorsk (Talk | contribs) deleted page QD (content was: "{{Software |package_name=QD |package_description=A package that supports a double-double datatype with about 32 decimal digits |package_idnumber=11 }} =Introduction= QD is a library supporting quadruple precision. SHARCNET provides this...")
- 12:31, 14 May 2019 Ppomorsk (Talk | contribs) deleted page DDT (there is a DDT page on CC wiki with this content)
- 12:30, 14 May 2019 Ppomorsk (Talk | contribs) deleted page ASE (content was: "= steps to install ASE in your own space = 1. Installation, take a look at how to use pip at Sharcnet https://www.sharcnet.ca/help/index.php/Python#Using_pip I..." (and the only contributor was "Jemmyhu"))
- 12:30, 14 May 2019 Ppomorsk (Talk | contribs) deleted page DAR (content was: "{{Software |package_name=dar |package_description=A shell command to back up directory trees and files |package_idnumber=140 }} =Introduction= Dar is a shell command that backs up directory trees and files, taking care of hard links, E...")
- 12:29, 14 May 2019 Ppomorsk (Talk | contribs) deleted page ARPACK-NG (content was: "{{Software |package_name=ARPACK-NG |package_description=a collection of Fortran77 subroutines to solve eigenvalue problems |package_idnumber=112 }} =Introduction= ARPACK is a collection of Fortran77 subroutines designed to solve large s...")
- 12:28, 14 May 2019 Ppomorsk (Talk | contribs) deleted page BIOPERLRUN (content was: "{{Software |package_name=BIOPERLRUN |package_description=Provides a suite bioperlrun wrapper interface modules to various bioinformatics applications. |package_id..." (and the only contributor was "Roberpj"))
- 12:25, 14 May 2019 Ppomorsk (Talk | contribs) deleted page AMICA (content was: "<big>'''AMICA''' is an "Code for AMICA: Adaptive Mixture ICA with shared components". (Page created & building steps tested by Paul Preney on Dec. 9, 2016.) ==Building AMICA on Graham== To build AMICA on Graham (tested Aug. 30, 2017):...")
- 12:22, 14 May 2019 Ppomorsk (Talk | contribs) deleted page BIO-SAMTOOLS (content was: "{{Template:GrahamUpdate}} =1.38= Tested on orca running centos 6.4 by doug@sharcnet.ca on Jul29, 2013. Step 1) Prepare environment ... <pre> cd ~/ module purge all /bin/rm -rf .cpan perl5 (optional) export PERL5LIB=/home/$USER/perl5/li...")
- 12:18, 14 May 2019 Ppomorsk (Talk | contribs) deleted page TopHat (content was: "<big>'''TopHat''' is a fast splice junction mapper for RNA-Seq reads. ==Tophat installation on new Compute Canada systems (cedar and graham)== wget https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz tar xvfz tophat-2.1...")
- 12:17, 14 May 2019 Ppomorsk (Talk | contribs) deleted page PopAlu (content was: "{{Template:LegacyPage}} =Software Information= PopAlu is an open source C++ project: * URL: https://github.com/aimeida/PopAlu =Foreword= The following installation instructions are based on work done in [https://www.sharcnet.ca/my/pr...")
- 11:50, 14 May 2019 Ppomorsk (Talk | contribs) deleted page LSPREPOST (content was: "{{Software |package_name=LSPREPOST |package_description=Pre and Post processor for ls-dyna. |package_idnumber=155 }} =Introduction= LS-PrePost is an advanced in..." (and the only contributor was "Roberpj"))
- 11:47, 14 May 2019 Ppomorsk (Talk | contribs) deleted page SAMTOOLS (content was: "{{Software |package_name=SAMTOOLS |package_description=Sequence Alignment/Map generic format for storing large nucleotide sequence alignments. |package_idnumber=163 }} =Introduction= SAM (Sequence Alignment/Map) is a flexible generic fo...")
- 16:33, 13 May 2019 Ppomorsk (Talk | contribs) deleted page VMD (content was: "{{Software |package_name=VMD |package_description=Program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scri..." (and the only contributor was "Roberpj"))
- 16:32, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Dice (content was: "=0.9= * NOTE: The Dice web site is here: https://sanshar.github.io/Dice/ Tested on orca running centos 6.8 by preney@sharcnet.ca on June 6, 2017.<br> 1) Download Instructions <pre>cd $HOME mkdir build cd build # Download DICE: wget ht...")
- 16:31, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Dedicated Programming Support Projects (content was: "#REDIRECT Code Repositories")
- 16:30, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Ssh for Windows Users (content was: "#REDIRECTSSH#Windows" (and the only contributor was "Ppomorsk"))
- 16:29, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Genome-wide Prediction of Mutant Single Nucleotide Polymorphisms based on Shannon Information Theory (moved to staff wiki)
- 16:28, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Individual-based Model of Forest Dynamics to Study Global Ecological Change (moved to staff wiki)
- 16:23, 13 May 2019 Ppomorsk (Talk | contribs) deleted page International summer school (content was: "[http://summerschool.niif.hu/ ISS 2014] - International Summer School 2014 June 01 to 06, 2014, Budapest SHARCNET attendee: Tyson Whitehead Other Compute Canada attendees: Jonathan Ferland = Talks = == Exascale == * good intro talk...")
- 16:21, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Managing your files effectively at SHARCNET with SVN (content was: "#REDIRECT Webinar 2014 Managing your files effectively at SHARCNET with SVN" (and the only contributor was "Edward"))
- 16:21, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Introduction for Linux Abstract (content was: "#REDIRECT Webinar 2013 Introduction for Linux Abstract" (and the only contributor was "Ppomorsk"))
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- 16:20, 13 May 2019 Ppomorsk (Talk | contribs) moved page Introduction for Linux Abstract to Webinar 2013 Introduction for Linux Abstract
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- 16:15, 13 May 2019 Ppomorsk (Talk | contribs) deleted page The Benefits of GLOST for Many Jobs (content was: "#REDIRECT Webinar 2018 The Benefits of GLOST for Many Jobs" (and the only contributor was "Ppomorsk"))
- 16:12, 13 May 2019 Ppomorsk (Talk | contribs) deleted page All about job wait times in the Graham queue (content was: "#REDIRECT Webinar 2018 All about job wait times in the Graham queue" (and the only contributor was "Ppomorsk"))
- 16:12, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Using Computational Chemistry software effectively on Graham (content was: "#REDIRECT Webinar 2018 Using Computational Chemistry software effectively on Graham" (and the only contributor was "Ppomorsk"))
- 16:12, 13 May 2019 Ppomorsk (Talk | contribs) moved page Using Computational Chemistry software effectively on Graham to Webinar 2018 Using Computational Chemistry software effectively on Graham
- 16:12, 13 May 2019 Ppomorsk (Talk | contribs) moved page All about job wait times in the Graham queue to Webinar 2018 All about job wait times in the Graham queue
- 16:10, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Fundamentals of working at the command line at Graham (content was: "#REDIRECT Webinar 2018 Fundamentals of working at the command line at Graham" (and the only contributor was "Ppomorsk"))
- 16:10, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Debugging on Graham with DDT (content was: "#REDIRECT Webinar 2018 Debugging on Graham with DDT" (and the only contributor was "Ppomorsk"))
- 16:10, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Introduction to MySQL on Graham (content was: "#REDIRECT Webinar 2018 Introduction to MySQL on Graham" (and the only contributor was "Ppomorsk"))
- 16:10, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Harnessing the Power of Heterogeneous Computing using Boost.Compute + OpenCL (content was: "#REDIRECT Webinar 2018 Harnessing the Power of Heterogeneous Computing using Boost.Compute + OpenCL" (and the only contributor was "Ppomorsk"))
- 16:10, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Concurrent File I/O by Multiple Processes (content was: "#REDIRECT Webinar 2018 Concurrent File I/O by Multiple Processes" (and the only contributor was "Ppomorsk"))
- 16:09, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Understand (and potentially reduce) job wait times (content was: "#REDIRECT Webinar 2018 Understand (and potentially reduce) job wait times" (and the only contributor was "Ppomorsk"))
- 16:09, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Using MATLAB effectively on Graham and Cedar (content was: "#REDIRECT Webinar 2018 Using MATLAB effectively on Graham and Cedar" (and the only contributor was "Ppomorsk"))
- 16:09, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MySQL Part 2: Relations and Joins (content was: "#REDIRECT Webinar 2018 MySQL Part 2: Relations and Joins" (and the only contributor was "Ppomorsk"))
- 16:09, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Using Pseudorandom Number Sequences in C++ (content was: "#REDIRECT Webinar 2018 Using Pseudorandom Number Sequences in C++" (and the only contributor was "Ppomorsk"))
- 16:09, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Code profiling on Graham (content was: "#REDIRECT Webinar 2018 Code profiling on Graham" (and the only contributor was "Ppomorsk"))
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- 16:07, 13 May 2019 Ppomorsk (Talk | contribs) moved page MySQL Part 2: Relations and Joins to Webinar 2018 MySQL Part 2: Relations and Joins
- 16:07, 13 May 2019 Ppomorsk (Talk | contribs) moved page Using MATLAB effectively on Graham and Cedar to Webinar 2018 Using MATLAB effectively on Graham and Cedar
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Stock Prediction Using Recurrent Neural Network to Webinar 2018 Stock Prediction Using Recurrent Neural Network
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Understand (and potentially reduce) job wait times to Webinar 2018 Understand (and potentially reduce) job wait times
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page The Benefits of GLOST for Many Jobs to Webinar 2018 The Benefits of GLOST for Many Jobs
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Concurrent File I/O by Multiple Processes to Webinar 2018 Concurrent File I/O by Multiple Processes
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Harnessing the Power of Heterogeneous Computing using Boost.Compute + OpenCL to Webinar 2018 Harnessing the Power of Heterogeneous Computing using Boost.Compute + OpenCL
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Introduction to MySQL on Graham to Webinar 2018 Introduction to MySQL on Graham
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Debugging on Graham with DDT to Webinar 2018 Debugging on Graham with DDT
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Fundamentals of working at the command line at Graham to Webinar 2018 Fundamentals of working at the command line at Graham
- 16:06, 13 May 2019 Ppomorsk (Talk | contribs) moved page Using Pseudorandom Number Sequences in C++ to Webinar 2018 Using Pseudorandom Number Sequences in C++
- 16:05, 13 May 2019 Ppomorsk (Talk | contribs) moved page Code profiling on Graham to Webinar 2018 Code profiling on Graham
- 16:04, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Dipping into C++17 Parallel Algorithms with Intel's Parallel STL (content was: "#REDIRECT Webinar 2019 Dipping into C++17 Parallel Algorithms with Intel's Parallel STL" (and the only contributor was "Ppomorsk"))
- 16:04, 13 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17854 of page Online Seminars patrolled
- 16:04, 13 May 2019 Ppomorsk (Talk | contribs) deleted page The Monad Understanding Hurdle (content was: "#REDIRECT Webinar 2019 The Monad Understanding Hurdle" (and the only contributor was "Ppomorsk"))
- 16:04, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Best practices on Graham (content was: "#REDIRECT Webinar 2019 Best practices on Graham" (and the only contributor was "Ppomorsk"))
- 16:03, 13 May 2019 Ppomorsk (Talk | contribs) deleted page What Happened To My Job? (content was: "#REDIRECT Webinar 2019 What Happened To My Job?" (and the only contributor was "Ppomorsk"))
- 16:03, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Introduction to parallel programming with MPI and Python (content was: "#REDIRECT Webinar 2019 Introduction to parallel programming with MPI and Python" (and the only contributor was "Ppomorsk"))
- 16:03, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Exploring Octave package dataframe (content was: "#REDIRECT Webinar 2019 Exploring Octave package dataframe" (and the only contributor was "Ppomorsk"))
- 16:03, 13 May 2019 Ppomorsk (Talk | contribs) deleted page PRE and POST production on Graham (content was: "#REDIRECT Webinar 2019 PRE and POST production on Graham" (and the only contributor was "Ppomorsk"))
- 16:03, 13 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17853 of page Online Seminars patrolled
- 16:02, 13 May 2019 Ppomorsk (Talk | contribs) moved page The Monad Understanding Hurdle to Webinar 2019 The Monad Understanding Hurdle
- 16:02, 13 May 2019 Ppomorsk (Talk | contribs) moved page Best practices on Graham to Webinar 2019 Best practices on Graham
- 16:02, 13 May 2019 Ppomorsk (Talk | contribs) moved page What Happened To My Job? to Webinar 2019 What Happened To My Job?
- 16:02, 13 May 2019 Ppomorsk (Talk | contribs) moved page Dipping into C++17 Parallel Algorithms with Intel's Parallel STL to Webinar 2019 Dipping into C++17 Parallel Algorithms with Intel's Parallel STL
- 16:02, 13 May 2019 Ppomorsk (Talk | contribs) moved page Introduction to parallel programming with MPI and Python to Webinar 2019 Introduction to parallel programming with MPI and Python
- 16:01, 13 May 2019 Ppomorsk (Talk | contribs) moved page Exploring Octave package dataframe to Webinar 2019 Exploring Octave package dataframe
- 16:01, 13 May 2019 Ppomorsk (Talk | contribs) moved page PRE and POST production on Graham to Webinar 2019 PRE and POST production on Graham
- 13:37, 13 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17838 of page GPU Accelerated Computing patrolled
- 13:34, 13 May 2019 Ppomorsk (Talk | contribs) deleted page CONVERGE (content was: "{{Software |package_name=CONVERGE |package_description=CFD Code Using the AMR Mesh Generation Technique |package_idnumber=154 }} =Introduction= A converge module is made available on sharcnet to run large jobs in the mpi queue. =Versi...")
- 13:33, 13 May 2019 Ppomorsk (Talk | contribs) deleted page CaMa-Flood (content was: "{{Template:GrahamUpdate}} The CaMa-Flood (Catchment-based Macro-scale Floodplain) model is designed to simulate the hydrodynamics in continental-scale rivers. ==CaMa-Flood v3.6.2 installation guide== To build this software on SHARCNET,...")
- 13:33, 13 May 2019 Ppomorsk (Talk | contribs) deleted page CPAN (content was: "{{Template:LegacyPage}} {{Software |package_name=CPAN |package_description=The Comprehensive Perl Archive Network|package_idnumber=169 }} =Introduction= A meta module providing an updated version of the Cpan shell. =Version Selection=...")
- 13:32, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Caret (content was: "=6.0.78= Below steps tested on orca running centos 6.9 by doug@sharcnet.ca on Feb 21, 2018.<br> <pre> ssh orca.sharcnet.ca [roberpj@orc-login1:~] ssh orc-dev3..." (and the only contributor was "Roberpj"))
- 13:30, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Programming Xeon Phi (content was: " =The Architecture= Xeon Phi is the first Intel Many Integrated Core (MIC) architecture product that combines many Intel CPU cores onto a single chip. The Xeon Phi co-processor can be considered as an on-chip computing node which has 60(...")
- 13:29, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Pyomo (content was: "== Introduction == Pyomo is a Python-based open-source software package that supports a diverse set of optimization capabilities for formulating, solving, and an..." (and the only contributor was "Jnandez"))
- 13:29, 13 May 2019 Ppomorsk (Talk | contribs) deleted page NWCHEM (content was: "{{Software |package_name=NWCHEM |package_description=A computational chemistry package |package_idnumber=12 }} ==Introduction== NWChem is a computational chemistry package that is designed to run on high-performance parallel supercompute...")
- 13:28, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MPFUN (content was: "{{Template:LegacyPage}} {{Software |package_name=MPFUN |package_description=A Fortran-90 arbitrary precision package |package_idnumber=16 }} ===Introduction=== MPFUN90 is a Fortran-90 arbitrary precision package (i.e. user specifies the...")
- 13:28, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MODE (content was: "{{Template:LegacyPage}} {{Software |package_name=MODE |package_description=Lumerical MODE provides tools for guided and eigenmode expansion (EME) solver |package_idnumber=162 }} =Introduction= Provides mode software for use by research...")
- 13:27, 13 May 2019 Ppomorsk (Talk | contribs) deleted page TRINITY (content was: "<!--checked2016--> {{Template:GrahamUpdate}} =2.0.6= This document provides test and build instructions for http://trinityrnaseq.github.io/ provided by doug@sharcnet.ca 17jun2015: 1) Demonstrate howto use the 'unsupported' sharcnet bui...")
- 13:27, 13 May 2019 Ppomorsk (Talk | contribs) deleted page PETSC SLEPC (content was: "<!--checked2016--> {{Software |package_name=PETSC_SLEPC |package_description=A suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations |package_idnum...")
- 13:26, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Pymol (content was: "{{GrahamUpdate}} ==Pymol on new Compute Canada systems (cedar and graham)== Pymol can be installed through Anaconda (see [https://docs.computecanada.ca/wiki/Anaconda/en Anaconda page] on docs.computecanada.ca for more details). First,...")
- 13:25, 13 May 2019 Ppomorsk (Talk | contribs) deleted page PARI/GP (content was: "{{Software |package_name=PARI/GP |package_description=A computer algebra system designed for fast computations in number theory |package_idnumber=93 }} <b>Introduction</b> Please note PARI/GP is a package installed as part of the opera...")
- 13:24, 13 May 2019 Ppomorsk (Talk | contribs) deleted page LLVM (content was: "{{Software |package_name=LLVM |package_description=The LLVM Compiler Project with Sub-Projects Clang,Openmp,Polly |package_idnumber=185 }} =Version Selection= <..." (and the only contributor was "Roberpj"))
- 13:24, 13 May 2019 Ppomorsk (Talk | contribs) deleted page JULIA (content was: "{{Template:GrahamUpdate}} {{stub}} =versions and installation= ==0.6.2== The following two commands will (1) download the Julia binary from the website (julialang.org) as a tar file, and (2) extract the tar file. The target directory...")
- 13:22, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Winsshfs (content was: "#REDIRECT SSHFS" (and the only contributor was "Edward"))
- 13:22, 13 May 2019 Ppomorsk (Talk | contribs) deleted page YT (content was: "{{Template:GrahamUpdate}} {{Software |package_name=Yt |package_description=Visualization |package_idnumber=151 }} ==Introduction== The yt project is a Python package for analyzing and visualizing volumetric, multi-resolution astrophysic...")
- 13:22, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Yambo (content was: "{{Template:GrahamUpdate}} Jemmy Hu, Oct. 18, 2016 Steps to build Yambo on Sharcnet 1) using the default the environment settings [jemmyhu@saw-login1:~/work/software/yambo/4.0.4] module list Currently Loaded Modulefiles: 1) torque/...")
- 13:21, 13 May 2019 Ppomorsk (Talk | contribs) deleted page XCRYSDEN (content was: "{{Software |package_name=XCRYSDEN |package_description=Visualization software |package_idnumber=94 }} = XCrySDen on Cedar and Graham= On cedar and graham XCrySDen is installed as a module. To use it, connect with the graphical interfa...")
- 13:20, 13 May 2019 Ppomorsk (Talk | contribs) deleted page SeqAn (content was: "{{Template:GrahamUpdate}} =Software Information= SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. * URL: http://www.seqan.de/ * Downloads:...")
- 13:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page ILOGCPLEX (content was: "{{Template:GrahamUpdate}} {{Software |package_name=ILOGCPLEX |package_description=A component of IBM ILOG CPLEX Optimization Studio |package_idnumber=109 }} =Introduction= Users must join first the <i>ilogcplex</i> group before the sof...")
- 12:38, 13 May 2019 Ppomorsk (Talk | contribs) deleted page OPENMPI (content was: "{{Software |package_name=OPENMPI |package_description=Implementation of MPI-1 and MPI-2 message passing standards |package_idnumber=5 }} =Compute Canada Clusters= The default module version of OpenMPI on cedar, graham and new-orca is v...")
- 12:35, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Wise2/Genewise (content was: "This software is related to ticket 24610[https://www.sharcnet.ca/my/problems/ticket/24610] and ticket 25036[https://www.sharcnet.ca/my/problems/ticket/25036] To build wise2, you should start with unzipping the tar file, then the "glib-c...")
- 12:35, 13 May 2019 Ppomorsk (Talk | contribs) deleted page YAML-CPP (content was: "{{LegacyPage}} =0.5.2= The following installation instructions are based on https://github.com/jbeder/yaml-cpp/blob/master/install.txt Apr27,2015 <doug@sharcnet.ca>: ===System Installs=== Both yamp-cpp and yamp-cpp-devel repository...")
- 12:32, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Transposome (content was: "<!-- Checked 2019 Ed --> =Software Information= Transposome is a toolkit for annotation of transposable element families from unassembled sequence reads. * URL: http://sestaton.github.io/Transposome * Git: https://github.com/sestaton/T...")
- 12:32, 13 May 2019 Ppomorsk (Talk | contribs) deleted page FSL (content was: "<!--checked2016--> == General Info == [http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/ FSL website] FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. It runs on Apple and PCs (both Linux, and Windows via...")
- 12:31, 13 May 2019 Ppomorsk (Talk | contribs) deleted page VASP (content was: "{{Template:GrahamUpdate}} <big>'''VASP''': The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from...")
- 12:29, 13 May 2019 Ppomorsk (Talk | contribs) deleted page NETCDF (content was: "{{GrahamUpdate}} {{Software |package_name=NETCDF |package_description=An interface for array-oriented data access and a library that provides an implementation of the interface |package_idnumber=18 }} =Introduction= Provides NetCDF for...")
- 12:27, 13 May 2019 Ppomorsk (Talk | contribs) deleted page PARPACK (content was: "#REDIRECT ARPACK-NG" (and the only contributor was "Roberpj"))
- 12:25, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MrBAYES (content was: "{{Software |package_name=MrBAYES |package_description=Bayesian estimation of phylogeny |package_idnumber=37 }} =Introduction= MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evoluti...")
- 12:25, 13 May 2019 Ppomorsk (Talk | contribs) deleted page RLWRAP (content was: "{{Software |package_name=RLWRAP |package_description=A small utility that uses the GNU readline library |package_idnumber=124 }} =Usage on new Compute Canada clusters= This software has not yet been installed on the new clusters cedar a...")
- 12:24, 13 May 2019 Ppomorsk (Talk | contribs) deleted page GlimmerHMM (content was: "<!--checked2016--> =3.0.1= This document explains howto compile 64bit binaries for GlimmerHMM to run on sharcnet clusters. Provided by doug@sharcnet.ca 26jun201..." (and the only contributor was "Roberpj"))
- 12:24, 13 May 2019 Ppomorsk (Talk | contribs) deleted page GAP (content was: "{{Software |package_name=GAP |package_description=System for computational discrete algebra. |package_idnumber=139 }} =Usage on new Compute Canada clusters= This software has not yet been installed on the new clusters cedar and graham....")
- 12:23, 13 May 2019 Ppomorsk (Talk | contribs) deleted page FFTW (content was: "{{Software |package_name=FFTW |package_description=library |package_idnumber=14 }} ==Introduction== FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and...")
- 12:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page RUBY (content was: "{{Template:GrahamUpdate}} {{Software |package_name=RUBY |package_description=An open source programming language with a focus on simplicity and productivity |pack..." (and the only contributor was "Roberpj"))
- 12:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MGLTOOLS (content was: "{{Software |package_name=MGLTOOLS |package_description=Visualization and analysis of molecular structures. |package_idnumber=176 }} =Usage on new Compute Canada clusters= This software has not yet been installed on the new clusters ced...")
- 12:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page LRS (content was: "{{Template:LegacyPage}} =060= * This wiki shows howto compile MPLRS following the source <i>readme</i> file. Posted by <doug@sharcnet.ca> 24sep2015. <pre> ssh iqaluk.sharcnet.ca module unload intel openmpi mkl module load intel/15.0.3...")
- 15:26, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17837 of page BIOPERL patrolled
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- 16:30, 10 May 2019 Ppomorsk (Talk | contribs) restored page ABAQUS (325 revisions restored: turns out this is still needed on remaining legacy systems)
- 16:28, 10 May 2019 Fm (Talk | contribs) changed group membership for User:Ppomorsk from (none) to administrator
- 12:23, 10 May 2019 Ppomorsk (Talk | contribs) deleted page Template:Ancient 27047 (content was: "{| cellpadding=5 style="border:4px solid #CD5C5C" |- bgcolor="#FFDAB9" | This page is flagged as an 'ancient wiki page' and is under review in ticket {{{1}}}. |} __..." (and the only contributor was "Edward"))
- 16:42, 9 May 2019 Ppomorsk (Talk | contribs) deleted page NCBI/C++TOOLKIT (content was: "#REDIRECT NCBIC++TOOLKIT" (and the only contributor was "Roberpj"))
- 16:40, 9 May 2019 Ppomorsk (Talk | contribs) deleted page LUMERICAL (content was: "#REDIRECT FDTD" (and the only contributor was "Roberpj"))
- 16:40, 9 May 2019 Ppomorsk (Talk | contribs) deleted page LS-DYNA (content was: "#REDIRECT LSDYNA" (and the only contributor was "Roberpj"))
- 16:39, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Usearch (content was: "#REDIRECT Panda-qiime {{GrahamUpdate}}")
- 16:39, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Git (content was: "#REDIRECT GIT" (and the only contributor was "Tyson"))
- 16:37, 9 May 2019 Ppomorsk (Talk | contribs) deleted page GIT (content was: "#REDIRECT Using Git" (and the only contributor was "Ppomorsk"))
- 16:36, 9 May 2019 Ppomorsk (Talk | contribs) deleted page SUBVERSION (content was: "#REDIRECT Using Subversion" (and the only contributor was "Ppomorsk"))
- 16:36, 9 May 2019 Ppomorsk (Talk | contribs) moved page SUBVERSION to Using Subversion
- 16:33, 9 May 2019 Ppomorsk (Talk | contribs) moved page GIT to Using Git
- 16:10, 9 May 2019 Ppomorsk (Talk | contribs) deleted page GNUPLOT (content was: "#REDIRECT Using gnuplot" (and the only contributor was "Ppomorsk"))
- 16:06, 9 May 2019 Ppomorsk (Talk | contribs) moved page GNUPLOT to Using gnuplot (make this a tutorial)
- 16:02, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Using parallel I/O in SHARCNET (content was: "#REDIRECT Webinar 2015 Using parallel I/O in SHARCNET" (and the only contributor was "Edward"))
- 16:01, 9 May 2019 Ppomorsk (Talk | contribs) deleted page ParaView (content was: "#REDIRECT Visualization of 2D and 3D datasets with ParaView" (and the only contributor was "Razoumov"))
- 16:00, 9 May 2019 Ppomorsk (Talk | contribs) deleted page OpenFOAM (content was: "#REDIRECT OPENFOAM" (and the only contributor was "Roberpj"))
- 15:56, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Sshfuse (content was: "#REDIRECT SSHFS" (and the only contributor was "Edward"))
- 15:56, 9 May 2019 Ppomorsk (Talk | contribs) deleted page SPARK (content was: "#REDIRECT Apache Spark")
- 15:54, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Deploying a web server. (content was: "#REDIRECT Deploying a web server" (and the only contributor was "Preney"))