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  • 11:29, 13 May 2019 Ppomorsk (Talk | contribs) deleted page NETCDF (content was: "{{GrahamUpdate}} {{Software |package_name=NETCDF |package_description=An interface for array-oriented data access and a library that provides an implementation of the interface |package_idnumber=18 }} =Introduction= Provides NetCDF for...")
  • 11:27, 13 May 2019 Ppomorsk (Talk | contribs) deleted page PARPACK (content was: "#REDIRECT ARPACK-NG" (and the only contributor was "Roberpj"))
  • 11:25, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MrBAYES (content was: "{{Software |package_name=MrBAYES |package_description=Bayesian estimation of phylogeny |package_idnumber=37 }} =Introduction= MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evoluti...")
  • 11:25, 13 May 2019 Ppomorsk (Talk | contribs) deleted page RLWRAP (content was: "{{Software |package_name=RLWRAP |package_description=A small utility that uses the GNU readline library |package_idnumber=124 }} =Usage on new Compute Canada clusters= This software has not yet been installed on the new clusters cedar a...")
  • 11:24, 13 May 2019 Ppomorsk (Talk | contribs) deleted page GlimmerHMM (content was: "<!--checked2016--> =3.0.1= This document explains howto compile 64bit binaries for GlimmerHMM to run on sharcnet clusters. Provided by doug@sharcnet.ca 26jun201..." (and the only contributor was "Roberpj"))
  • 11:24, 13 May 2019 Ppomorsk (Talk | contribs) deleted page GAP (content was: "{{Software |package_name=GAP |package_description=System for computational discrete algebra. |package_idnumber=139 }} =Usage on new Compute Canada clusters= This software has not yet been installed on the new clusters cedar and graham....")
  • 11:23, 13 May 2019 Ppomorsk (Talk | contribs) deleted page FFTW (content was: "{{Software |package_name=FFTW |package_description=library |package_idnumber=14 }} ==Introduction== FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and...")
  • 11:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page RUBY (content was: "{{Template:GrahamUpdate}} {{Software |package_name=RUBY |package_description=An open source programming language with a focus on simplicity and productivity |pack..." (and the only contributor was "Roberpj"))
  • 11:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MGLTOOLS (content was: "{{Software |package_name=MGLTOOLS |package_description=Visualization and analysis of molecular structures. |package_idnumber=176 }} =Usage on new Compute Canada clusters= This software has not yet been installed on the new clusters ced...")
  • 11:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page LRS (content was: "{{Template:LegacyPage}} =060= * This wiki shows howto compile MPLRS following the source <i>readme</i> file. Posted by <doug@sharcnet.ca> 24sep2015. <pre> ssh iqaluk.sharcnet.ca module unload intel openmpi mkl module load intel/15.0.3...")
  • 14:26, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17837 of page BIOPERL patrolled
  • 14:25, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17836 of page BIOPERL patrolled
  • 14:22, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17835 of page BIOPERL patrolled
  • 14:19, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17834 of page BIOPERL patrolled
  • 14:17, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17833 of page BIOPERL patrolled
  • 14:16, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17832 of page AMICA patrolled
  • 15:30, 10 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17831 of page ABAQUS patrolled
  • 15:30, 10 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17830 of page ABAQUS patrolled
  • 15:30, 10 May 2019 Ppomorsk (Talk | contribs) restored page ABAQUS (325 revisions restored: turns out this is still needed on remaining legacy systems)
  • 15:28, 10 May 2019 Fm (Talk | contribs) changed group membership for User:Ppomorsk from (none) to administrator
  • 11:23, 10 May 2019 Ppomorsk (Talk | contribs) deleted page Template:Ancient 27047 (content was: "{| cellpadding=5 style="border:4px solid #CD5C5C" |- bgcolor="#FFDAB9" | This page is flagged as an 'ancient wiki page' and is under review in ticket {{{1}}}. |} __..." (and the only contributor was "Edward"))
  • 15:42, 9 May 2019 Ppomorsk (Talk | contribs) deleted page NCBI/C++TOOLKIT (content was: "#REDIRECT NCBIC++TOOLKIT" (and the only contributor was "Roberpj"))
  • 15:40, 9 May 2019 Ppomorsk (Talk | contribs) deleted page LUMERICAL (content was: "#REDIRECT FDTD" (and the only contributor was "Roberpj"))
  • 15:40, 9 May 2019 Ppomorsk (Talk | contribs) deleted page LS-DYNA (content was: "#REDIRECT LSDYNA" (and the only contributor was "Roberpj"))
  • 15:39, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Usearch (content was: "#REDIRECT Panda-qiime {{GrahamUpdate}}")
  • 15:39, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Git (content was: "#REDIRECT GIT" (and the only contributor was "Tyson"))
  • 15:37, 9 May 2019 Ppomorsk (Talk | contribs) deleted page GIT (content was: "#REDIRECT Using Git" (and the only contributor was "Ppomorsk"))
  • 15:36, 9 May 2019 Ppomorsk (Talk | contribs) deleted page SUBVERSION (content was: "#REDIRECT Using Subversion" (and the only contributor was "Ppomorsk"))
  • 15:36, 9 May 2019 Ppomorsk (Talk | contribs) moved page SUBVERSION to Using Subversion
  • 15:33, 9 May 2019 Ppomorsk (Talk | contribs) moved page GIT to Using Git
  • 15:10, 9 May 2019 Ppomorsk (Talk | contribs) deleted page GNUPLOT (content was: "#REDIRECT Using gnuplot" (and the only contributor was "Ppomorsk"))
  • 15:06, 9 May 2019 Ppomorsk (Talk | contribs) moved page GNUPLOT to Using gnuplot (make this a tutorial)
  • 15:02, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Using parallel I/O in SHARCNET (content was: "#REDIRECT Webinar 2015 Using parallel I/O in SHARCNET" (and the only contributor was "Edward"))
  • 15:01, 9 May 2019 Ppomorsk (Talk | contribs) deleted page ParaView (content was: "#REDIRECT Visualization of 2D and 3D datasets with ParaView" (and the only contributor was "Razoumov"))
  • 15:00, 9 May 2019 Ppomorsk (Talk | contribs) deleted page OpenFOAM (content was: "#REDIRECT OPENFOAM" (and the only contributor was "Roberpj"))
  • 14:56, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Sshfuse (content was: "#REDIRECT SSHFS" (and the only contributor was "Edward"))
  • 14:56, 9 May 2019 Ppomorsk (Talk | contribs) deleted page SPARK (content was: "#REDIRECT Apache Spark")
  • 14:54, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Deploying a web server. (content was: "#REDIRECT Deploying a web server" (and the only contributor was "Preney"))
  • 14:53, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Grass (content was: "{{Template:LegacyPage}} == Installing GRASS == This page describes GRASS installation on one of our visualization workstations. Choose GRASS installation directory export GRASSDIR=/work/username/grass Next download and compile PROJ4...")
  • 14:51, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Astrophysics (content was: "#REDIRECT Astrophysics Portal" (and the only contributor was "Tyson"))
  • 14:51, 9 May 2019 Ppomorsk (Talk | contribs) deleted page SHARCNET Astrophysics Portal (content was: "#REDIRECT Astrophysics" (and the only contributor was "Tyson"))
  • 14:49, 9 May 2019 Ppomorsk (Talk | contribs) deleted page PETSc SLEPc (content was: "#REDIRECT PETSC SLEPC" (and the only contributor was "Roberpj"))
  • 14:49, 9 May 2019 Ppomorsk (Talk | contribs) deleted page MrBayes (content was: "#REDIRECT MrBAYES")
  • 14:49, 9 May 2019 Ppomorsk (Talk | contribs) deleted page PANDAseq (content was: "#REDIRECT Panda-qiime" (and the only contributor was "Edward"))
  • 14:49, 9 May 2019 Ppomorsk (Talk | contribs) deleted page OpenCL (content was: "#REDIRECT OPENCL" (and the only contributor was "Roberpj"))
  • 14:48, 9 May 2019 Ppomorsk (Talk | contribs) deleted page OpenMPI (content was: "#REDIRECT OPENMPI" (and the only contributor was "Roberpj"))
  • 14:47, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Panda (content was: "#REDIRECT panda-qiime" (and the only contributor was "Edward"))
  • 14:47, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Qiime (content was: "#REDIRECT panda-qiime" (and the only contributor was "Edward"))
  • 14:47, 9 May 2019 Ppomorsk (Talk | contribs) deleted page SAMtools (content was: "#REDIRECT SAMTOOLS" (and the only contributor was "Roberpj"))
  • 14:46, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Signal Handling (content was: "#REDIRECT Signal Handling and Checkpointing" (and the only contributor was "Dbm"))
  • 14:46, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Remote X Connections to Sharcnet (content was: "#REDIRECT Remote Graphical Connections" (and the only contributor was "Tyson"))
  • 14:45, 9 May 2019 Ppomorsk (Talk | contribs) deleted page XCrySDen (content was: "#REDIRECT XCRYSDEN" (and the only contributor was "Roberpj"))
  • 14:44, 9 May 2019 Ppomorsk (Talk | contribs) deleted page VisIt (content was: "#REDIRECT VISIT" (and the only contributor was "Roberpj"))
  • 14:43, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Remote File Access (content was: "{{Template:GrahamUpdate}} Note: this is a placeholder under development File management between SHARCNET systems and user's personal storage has always presented certain challenges, depending on the individual user's level of sophistic...")
  • 14:42, 9 May 2019 Ppomorsk (Talk | contribs) deleted page NetCDF (content was: "#REDIRECT NETCDF" (and the only contributor was "Roberpj"))
  • 14:42, 9 May 2019 Ppomorsk (Talk | contribs) deleted page ILOG/CPLEX (content was: "#REDIRECT ILOGCPLEX" (and the only contributor was "Roberpj"))
  • 13:27, 9 May 2019 Ppomorsk (Talk | contribs) deleted page PERL (content was: "{{Delete}}")
  • 14:39, 8 May 2019 Fm (Talk | contribs) deleted page ITK (re-deleted after undelete test)
  • 14:37, 8 May 2019 Fm (Talk | contribs) restored page ITK (8 revisions restored: test undelete)
  • 12:56, 8 May 2019 Ppomorsk (Talk | contribs) deleted page Improving your Python programs with NumPy and SciPy (content was: "#REDIRECT Webinar 2018 Improving your Python programs with NumPy and SciPy" (and the only contributor was "Ppomorsk"))
  • 12:55, 8 May 2019 Ppomorsk (Talk | contribs) moved page Improving your Python programs with NumPy and SciPy to Webinar 2018 Improving your Python programs with NumPy and SciPy
  • 12:54, 8 May 2019 Ppomorsk (Talk | contribs) deleted page ITK (content was: "{{Template:LegacyPage}} Insight Segmentation and Registration Toolkit (http://www.itk.org) is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis. The steps below ou...")
  • 12:53, 8 May 2019 Ppomorsk (Talk | contribs) deleted page ABAQUS (content was: "{{Delete|obsolete}}")
  • 12:53, 8 May 2019 Ppomorsk (Talk | contribs) deleted page ABINIT (content was: "{{delete|obsolete}}")
  • 12:52, 8 May 2019 Ppomorsk (Talk | contribs) deleted page ADF/BAND (content was: "{{delete|obsolete}}")
  • 12:52, 8 May 2019 Ppomorsk (Talk | contribs) deleted page AMBER (content was: "{{delete|obsolete}}")
  • 11:55, 6 May 2019 Ppomorsk (Talk | contribs) deleted page VESTA (content was: "{{Delete|obsolete}}")
  • 11:55, 6 May 2019 Ppomorsk (Talk | contribs) deleted page Big Data (content was: "{{Delete|obsolete}}")
  • 11:54, 6 May 2019 Ppomorsk (Talk | contribs) deleted page MAX3D: Visualization of Reciprocal Space (content was: "{{Delete|obsolete}}")
  • 09:15, 6 May 2019 Edward (Talk | contribs) moved page Managing your files effectively at SHARCNET with SVN to Webinar 2014 Managing your files effectively at SHARCNET with SVN
  • 09:14, 6 May 2019 Edward (Talk | contribs) moved page Using parallel I/O in SHARCNET to Webinar 2015 Using parallel I/O in SHARCNET
  • 09:25, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Supported Software Usage Documentation (content was: "#REDIRECT Supported Software Documentation" (and the only contributor was "Merz"))
  • 09:24, 3 May 2019 Ppomorsk (Talk | contribs) deleted page SYSTEM (content was: "{{Software |package_name=SYSTEM |package_description=Updated select system packages compiled with the gcc system compiler |package_idnumber=188 }} =Introduction=..." (and the only contributor was "Roberpj"))
  • 09:21, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Web portal (content was: "#REDIRECT Wiki tips and hints")
  • 09:18, 3 May 2019 Ppomorsk (Talk | contribs) deleted page OpenSees (content was: "'''OpenSees''' (Open System for Earthquake Engineering Simulation) is a software framework for simulating the seismic response of structural and geotechnical systems. It has advanced capabilities for modeling and analyzing the nonlinea...")
  • 09:15, 3 May 2019 Ppomorsk (Talk | contribs) deleted page OpenACC (content was: "{{Software |package_name=OpenACC |package_description=OpenACC - standard for parallel computing on heterogeneous systems (with GPGPUs) |package_idnumber= }} OpenACC is a programming standard for parallel computing, designed to simplify...")
  • 09:14, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Software (content was: "==Software== * Configuring your software environment with Modules * Supported Software Documentation (usage information for SHARCNET supported software) * Unsupported Software Documentation (documentation for unsupported soft...")
  • 09:13, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Supported Software Documentation (content was: "{{Template:LegacyPage}} SHARCNET provides official support, including installing and maintaining the software, for a limited number of supported software packages. In addition, we also provide documentation that we and our user communit...")
  • 09:13, 3 May 2019 Ppomorsk (Talk | contribs) deleted page HDFVIEW (content was: "{{Software |package_name=HDFVIEW |package_description=Visual Tool for Browsing and Editing HDF4 and HDF5 files. |package_idnumber=134 }} =Usage on new Compute Canada clusters= This software has not yet been installed on the new clusters...")
  • 09:13, 3 May 2019 Ppomorsk (Talk | contribs) deleted page JALVIEW (content was: "{{Software |package_name=JALVIEW |package_description=Bioinformatic visualization package |package_idnumber=174 }} =Introduction= Provides a manual binary insta..." (and the only contributor was "Roberpj"))
  • 09:13, 3 May 2019 Ppomorsk (Talk | contribs) deleted page EMACS (content was: "{{Software |package_name=EMACS |package_description=Text editor and much much more. |package_idnumber=175 }} =Introduction= The sharcnet module provides a newer..." (and the only contributor was "Roberpj"))
  • 09:13, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Bowtie2 (content was: " <big>'''Bowtie 2''' is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. ==Using Bowtie2 on Graham== Bowtie2 is installed as a module on Graham. <pre> module load bowtie2 </pre> After l...")
  • 09:12, 3 May 2019 Ppomorsk (Talk | contribs) deleted page GEOS (content was: "{{stub}} == General Info == GEOS http://trac.osgeo.org/geos/ was installed as a dependency for http://cran.r-project.org/web/packages/indicspecies/index.html == Version 3.4.2 == Version 3.4.2 was available on vdi-fedora20.user.sharcn...")
  • 09:12, 3 May 2019 Ppomorsk (Talk | contribs) deleted page GDB (content was: "{{Software |package_name=GDB |package_description=GDB https://www.gnu.org/software/gdb/ for debugging C, C++, Objective-C, Pascal and many more languages. |packag..." (and the only contributor was "Roberpj"))
  • 09:12, 3 May 2019 Ppomorsk (Talk | contribs) deleted page R (content was: "{{Software |package_name=R |package_description=a language and environment for statistical computing and graphics |package_idnumber=8 }} The documentation for using R on Compute Canada systems is available [https://docs.computecanada.ca...")
  • 09:11, 3 May 2019 Ppomorsk (Talk | contribs) deleted page NINJA (content was: "{{Software |package_name=NINJA |package_description=A small build system with a focus on speed. |package_idnumber=186 }} =Version Selection= <pre>module load ni..." (and the only contributor was "Roberpj"))
  • 09:11, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Using R and MPI (content was: " See documentation on [https://docs.computecanada.ca/wiki/R#Exploiting_parallelism_in_R Compute Canada Wiki]. The obsolete information previously on this page is available in the history of this article.")
  • 09:11, 3 May 2019 Ppomorsk (Talk | contribs) deleted page LAMMPS (content was: "{{Software |package_name=LAMMPS |package_description=Large-scale Atomic/Molecular Massively Parallel Simulator |package_idnumber=63 }} Up to date information about running LAMMPS is available on [https://docs.computecanada.ca/wiki/LAMMP...")
  • 09:10, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Hardware (content was: "==Hardware== * Hardware/System Resources (online reference of all documented systems) <!--* Current wait time distribution on core systems--> * NVIDIA K20/K80 GPU")
  • 09:10, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Scientific Computing (content was: "==Scientific Computing== * Solving Systems of Sparse Linear Equations (self-directed tutorial) * Using BLAS (LAPACK) routines with QD precision (62 digits). * LAPACK and ScaLAPACK Examples * INTERPRETERS vs COMPILERS *...")
  • 09:08, 3 May 2019 Ppomorsk (Talk | contribs) deleted page CuDNN (content was: "<big>'''cuDNN''' is an NVIDIA library with functionality used by deep neural network. It provides optimized versions of some operations like the convolution. cuDNN..." (and the only contributor was "Feimao"))
  • 09:08, 3 May 2019 Ppomorsk (Talk | contribs) deleted page OPENCV (content was: "{{Software |package_name=OPENCV |package_description=library of programming functions for real time computer vision |package_idnumber=135 }} =Introduction= The sharcnet openm module provides an uptodate version (compared to the version...")
  • 09:07, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Parallel Languages (content was: "=Haskell= Haskell is a mature, lazy, pure, functional language. These features can be summarized as follows * lazy - a value is not computed until needed, * pure - the output of a function is purely determined by its inputs, and * fu...")
  • 09:07, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Rmpi (content was: "If you have successfully built Rmpi and would like to share your findings with other sharcnet users enter the version number, system name, compilation instructions, build date and if you want to your username. <!--checked2015-->")
  • 09:06, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Globus / Gridftp (content was: "=Introduction= Globus is a method of copying large amounts of data securely and with a good speed between different servers/clusters, using browser-based interface. It is in active use in WestGrid and other consortia. It is using Gridft...")
  • 09:06, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Gaussian on SHARCNET systems (content was: "Please see [https://www.sharcnet.ca/my/software/show/21 Gaussian Software Page] <!--checked2015-->" (and the only contributor was "Jemmyhu"))
  • 09:05, 3 May 2019 Ppomorsk (Talk | contribs) deleted page KERAS (content was: "Documentation for KERAS is available at [https://docs.computecanada.ca/wiki/Keras Compute Canada wiki]. =NIX= Tested on COPPER running centos 6.9 by tyson@sharcnet.ca on Aug 1, 2018")
  • 09:04, 3 May 2019 Ppomorsk (Talk | contribs) deleted page GDL (content was: "Please refer to the GDL website for reference documentation ... http://gnudatalanguage.sourceforge.net/ <!--checked2015-->")
  • 09:04, 3 May 2019 Ppomorsk (Talk | contribs) deleted page RMPI (content was: "{{Software |package_name=RMPI |package_description=A package for R, a free software environment for statistical computing and graphics |package_idnumber=15 }} We do not provide an installation of Rmpi as part of the R installation....")
  • 09:03, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Using BLAS (LAPACK) routines with QD precision (62 digits). (content was: "#REDIRECT Using BLAS (LAPACK) routines with QD precision (62 digits)" (and the only contributor was "Ppomorsk"))
  • 09:03, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Scilab (content was: "#REDIRECT SCILAB" (and the only contributor was "Roberpj"))
  • 09:02, 3 May 2019 Ppomorsk (Talk | contribs) deleted page PYTHON (content was: "#REDIRECTPython" (and the only contributor was "Ppomorsk"))
  • 09:02, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Cloud Storage (content was: "#REDIRECT OwnCloud" (and the only contributor was "Edward"))
  • 09:02, 3 May 2019 Ppomorsk (Talk | contribs) deleted page ImageMagick (content was: "#REDIRECT IMAGEMAGICK" (and the only contributor was "Roberpj"))
  • 09:02, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Goblin (general compute cluster) (content was: "#REDIRECT Goblin" (and the only contributor was "Ppomorsk"))
  • 09:02, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Reviews of Selected Development Stage Languages (content was: "#REDIRECT Development Stage Software Reviews" (and the only contributor was "Roberpj"))
  • 09:02, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Clufflinks (content was: "#REDIRECT Cufflinks")
  • 15:15, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Portland (content was: "#REDIRECT PORTLAND" (and the only contributor was "Roberpj"))
  • 15:13, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Configuring your software environment with Modules (content was: "===Graham and Cedar=== The information presented below is for our legacy systems (Orca etc). The new Compute Canada national data centers, Graham and Cedar, use a somewhat different setup. Check the following link for details: https://d...")
  • 15:08, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Visualization Workstations (content was: "{{Template:GrahamUpdate}} ==About== ===Summary=== SHARCNET has a number of visualization workstations installed at particular partner institutions. Please see the [https://www.sharcnet.ca/my/systems Visualization Systems] list in the we...")
  • 15:07, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Monitoring Jobs (content was: "{{Template:LegacyPage}} This page provides useful information for monitoring and acquiring information about jobs that are scheduled, running or have finished running at SHARCNET. This could include finding the nodes the job is running...")
  • 15:06, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Dropbox (content was: "#REDIRECT OwnCloud {{LegacyPage}}")
  • 15:06, 2 May 2019 Ppomorsk (Talk | contribs) deleted page BLCR (content was: "{{Template:LegacyPage}} {{Software |package_name=BLCR |package_description=Application for checkpointing and restarting jobs |package_idnumber=74 }} =Introduction= Blcr is available for checkpointing and restarting serial or threaded jo...")
  • 15:05, 2 May 2019 Ppomorsk (Talk | contribs) deleted page UTIL (content was: "{{Template:LegacyPage}} {{Software |package_name=UTIL |package_description=A collection of tools for SHARCNET systems |package_idnumber=111 }} ==Overview== The util package is module loadable. To load util, use command: <pre> module l...")
  • 15:04, 2 May 2019 Ppomorsk (Talk | contribs) deleted page BIOSAMTOOLS (content was: "{{Ancient|27401}} {{Software |package_name=BIOSAMTOOLS |package_description=Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. |package_idnumber=150 }} =Introduction= Provides the biosam...")
  • 15:04, 2 May 2019 Ppomorsk (Talk | contribs) deleted page FHI-AIMS (content was: "{{Ancient|27407}} ==INTRODUCTION== FHI-AIMS is accessible to members of the <i>ihamlito</i> sharcnet group sponsored by Dr.Hamilton from WLU. Before using the..." (and the only contributor was "Roberpj"))
  • 15:04, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Development Stage Software Reviews (content was: "{{Template:LegacyPage}} {{Ancient|27047}} This wiki page provides a editable list of development stage software not currently installed on sharcnet. A template structure is provided for adding information by staff and regular users ali...")
  • 15:02, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Pathscale (content was: "#REDIRECT PATHSCALE" (and the only contributor was "Roberpj"))
  • 15:01, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Owncloud (content was: "#REDIRECT OwnCloud" (and the only contributor was "Edward"))
  • 15:01, 2 May 2019 Ppomorsk (Talk | contribs) deleted page MPC (content was: "{{Software |package_name=MPC |package_description=C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. |package_idnumber=148 }} =Introduction= The mpc sharcnet modules rov...")
  • 15:01, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Locally installed software (content was: "#REDIRECT Software Resources" (and the only contributor was "Merz"))
  • 14:59, 2 May 2019 Ppomorsk (Talk | contribs) deleted page IMSL (content was: "{{Template:LegacyPage}} {{Software |package_name=IMSL |package_description=Numerical Libraries |package_idnumber=53 }} ==Instruction for Release 5.0== <font color="red"> Please note, due to the lack of support for the specific compiler...")
  • 14:58, 2 May 2019 Ppomorsk (Talk | contribs) deleted page GRACE (content was: "{{Software |package_name=GRACE |package_description=A 2D plotting tool descended from xmgr |package_idnumber=182 }} =Introduction= Provides GRACE on sharcnets f..." (and the only contributor was "Roberpj"))
  • 14:58, 2 May 2019 Ppomorsk (Talk | contribs) deleted page GHC (content was: "{{Software |package_name=GHC |package_description= |package_idnumber=173 }} =Introduction= The sharcnet module provides the Glasgow Haskell Compiler GHC compile..." (and the only contributor was "Roberpj"))
  • 14:58, 2 May 2019 Ppomorsk (Talk | contribs) deleted page GMP (content was: "{{Software |package_name=GMP |package_description=A portable library written in C for arbitrary precision arithmetic |package_idnumber=19 }} =GMP on new Compute Canada clusters (cedar and graham)= GMP has not yet been installed on ceda...")
  • 14:58, 2 May 2019 Ppomorsk (Talk | contribs) deleted page FIREFLY (content was: "{{Template:GrahamUpdate}} {{Software |package_name=FIREFLY |package_description=PC GAMESS/Firefly |package_idnumber=91 }} ==Introduction== The PC GAMESS/Firefly is an ab initio and DFT computational chemistry program developed to offer h...")
  • 14:56, 2 May 2019 Ppomorsk (Talk | contribs) deleted page CP2K (content was: "{{Software |package_name=CP2K |package_description=Atomistic and Molecular Simulations of Solid State, Liquid, Molecular and Biological Systems |package_idnumber=161 }} <br> '''Note''' - if you are looking for '''potential''' and '''basi...")
  • 14:56, 2 May 2019 Ppomorsk (Talk | contribs) deleted page CDF (content was: "{{Template:GrahamUpdate}} {{Software |package_name=CDF |package_description= Self-describing data format for the storage and manipulation of scalar and multidimensional data |package_idnumber=51 }} =Introduction= Scientific data manage...")
  • 14:55, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Cufflinks (content was: "{{Template:LegacyPage}} =2.1.1= Installed and tested on orca running centos 6.? by jemmyhu@sharcnet.ca on Apr24, 2013.<br> Downloaded cufflinks-2.1.1 from http://cufflinks.cbcb.umd.edu the Linux-64 binary version. [roberpj@orc-login2:/...")
  • 14:55, 2 May 2019 Ppomorsk (Talk | contribs) deleted page COREUTILS (content was: "{{Template:GrahamUpdate}} {{Software |package_name=COREUTILS |package_description= A set of basic GNU tools commonly used in shell scripts. |package_idnumber=143 }} =Introduction= This module provides a more recent version of the coreu...")
  • 14:55, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Cat (content was: "#REDIRECT CAT" (and the only contributor was "Isaac"))
  • 14:55, 2 May 2019 Ppomorsk (Talk | contribs) deleted page CAT (content was: "{{LegacyPage}} {{System |cluster_name=cat |target_usage=General, emphasizing serial |system_idnumber=10 }} ==System Overview== {| class="wikitable" style="text-align:center" border="1" |- | CPU Model || Intel Xeon @ 2.4 GHz |- | Cores/n...")
  • 14:54, 2 May 2019 Ppomorsk (Talk | contribs) deleted page BitKinex (content was: "#REDIRECT WebDAV#Using a third party application (Windows)" (and the only contributor was "Edward"))
  • 14:54, 2 May 2019 Ppomorsk (Talk | contribs) deleted page CMAKE (content was: "{{Software |package_name=CMAKE |package_description=Tools designed to build, test and package software |package_idnumber=122 }} For up to date information on CMAKE, go to [https://docs.computecanada.ca/wiki/CMake Compute Canada wiki].")
  • 14:52, 2 May 2019 Ppomorsk (Talk | contribs) deleted page CHARM++ (content was: "{{Template:LegacyPage}} {{Software |package_name=CHARM++ |package_description=library |package_idnumber=40 }} ==Introduction== Charm++ is a parallel object-oriented programming language based on C++ and developed in the Parallel Programm...")
  • 14:52, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Copper (content was: "{{System |cluster_name=copper |target_usage=threaded/mpi jobs, GPU jobs, large memory jobs |system_idnumber=108 }} == Hardware == * nodes 1 - 8 ** 16 CPU cores (Dual Intel Xeon E5-2630 v3 @ 2.4 GHz) ** 4 NVIDIA Tesla K80 GPU cards (8 Ke...")
  • 14:52, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Wobbie (content was: "{{System |cluster_name=wobbie |target_usage=General purpose |system_idnumber=29 }} ==Usage== Wobbie is a contributed cluster. Jobs from non-contributors are normal (i.e. not required to be short) but the contributor group sometimes ask...")
  • 10:13, 2 May 2019 Ppomorsk (Talk | contribs) deleted page MONO (content was: "{{Template:GrahamUpdate}} {{Software |package_name=MONO |package_description=Runtime implementation of the ECMA Common Language Infrastructure. |package_idnumber..." (and the only contributor was "Roberpj"))
  • 10:13, 2 May 2019 Ppomorsk (Talk | contribs) deleted page MERCURIAL (content was: "{{Software |package_name=MERCURIAL |package_description=Source control management tool |package_idnumber=102 }} =Introduction= Mercurial is a free, distributed source control management tool. It offers you the power to efficiently handl...")
  • 10:13, 2 May 2019 Ppomorsk (Talk | contribs) deleted page MPFR (content was: "<!--checked2016--> {{Software |package_name=MPFR |package_description=To provide a library for multiple-precision floating-point computation |package_idnumber=76 }} =MPFR on new Compute Canada clusters (cedar and graham)= MPFR has not...")
  • 10:13, 2 May 2019 Ppomorsk (Talk | contribs) deleted page MOLDEN (content was: "{{Software |package_name=MOLDEN |package_description=A pre- and post processing program of molecular and electronic structure |package_idnumber=144 }} =Usage= Molden is available on vdi-centos6, or viz10-uwo, viz11-uwo, module load the...")
  • 10:12, 2 May 2019 Ppomorsk (Talk | contribs) deleted page MEEP (content was: "{{Template:LegacyPage}} ==MEEP== ticket-17704 Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems http://ab-initio.mit.edu/wiki/index.php/Meep It...")
  • 10:11, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Getting Started with MPI (content was: "== Foreward == If you would prefer to see videos and slides introducing MPI, SHARCNET has made available online General Interest webinars which are linked at the bottom of this page in the #Comments and Further Reading section. ==...")
  • 10:11, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Getting Started with SHARCNET (content was: "{{Template:GrahamUpdate}} <!--checked2016--> ==What is SHARCNET?== SHARCNET is a consortium of Canadian academic institutions who share a network of high performance..." (and the only contributor was "Isaac"))
  • 10:11, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Using Subversion (content was: "== Why Version Control == It is common that one has several versions of the same code that evolves constantly during the course of development. Quite often most people will be versioning their files manually with numbers indicating diff...")
  • 10:08, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Parallel Java: Using MPJ Express on SHARCNET (content was: "{{Template:Outdated}} {{Template:LegacyPage}} ''Note: users should consult with one of SHARCNET's HPTC Software Analysts prior to engaging in HPC development with Java;..." (and the only contributor was "Dbm"))
  • 10:08, 2 May 2019 Ppomorsk (Talk | contribs) deleted page FPGA Accelerated Computing (content was: "{{Template:Outdated}} __TOC__ <span style="color:red">'''Note''': the system that provided this functionality (School) has since been decommissioned. We've left this information here for posteriety but at present there are no systems...")
  • 10:07, 2 May 2019 Ppomorsk (Talk | contribs) deleted page WebDAV (content was: "{{Template:GrahamUpdate}} {{Template:Outdated}} =WebDAV : Web Distributed Authoring and Versioning= The WebDAV protocol is a framework which allows a user to create, move, and delete documents on a remote server. SHARCNet now provides a...")
  • 10:07, 2 May 2019 Ppomorsk (Talk | contribs) deleted page ACML (content was: "{{Software |package_name=ACML |package_description=The AMD Core Math Library including lapack, blasé, fft |package_idnumber=4 }} '''NOTE: ACML is no longer maintained and should not be used. This page is kept for archival purposes onl...")
  • 10:07, 2 May 2019 Ppomorsk (Talk | contribs) deleted page SUPERLU (content was: "{{Template:Outdated}} {{Software |package_name=SUPERLU |package_description=Library for direct solution of large, sparse, nonsymmetric linear equation systems. |p..." (and the only contributor was "Roberpj"))
  • 10:06, 2 May 2019 Ppomorsk (Talk | contribs) deleted page ISAACS (content was: "{{Template:Outdated}} ==Compiling isaacs-2.5== Here are the steps to compile ISAACS on a visualization workstation: export IDIR=/work/razoumov/20641 # select installation directory cd $IDIR wget http://sourceforge.net/projects/isa...")
  • 10:06, 2 May 2019 Ppomorsk (Talk | contribs) deleted page SCILAB (content was: "{{Template:LegacyPage}} {{Template:Outdated}} {{Software |package_name=Scilab |package_description=A scientific software package for numerical computations |package_idnumber=68 }} =Version Selection= This section is not applicable pers...")
  • 10:06, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Astrophysics/FLASH (content was: "{{Template:Outdated}} Local SHARCNET page for the astrophysical numerical code FLASH. ==Compilation tricks== *In the FLASH version commonly used in SHARCNET (v.20050218) there is an annoying bug preventing smooth compilation of the co...")
  • 10:06, 2 May 2019 Ppomorsk (Talk | contribs) deleted page OpenMP Reduction for User Defined Data Types (content was: "== <center>OpenMP Reduction for User Defined Data Types </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@sharcnet.ca'''</center> <ce..." (and the only contributor was "Nickc"))
  • 10:06, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Using BLAS (LAPACK) routines with QD precision (62 digits) (content was: "{{Template:GrahamUpdate}} ===<center> Using BLAS (LAPACK) routines with QD precision </center> === <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail:..." (and the only contributor was "Nickc"))
  • 10:05, 2 May 2019 Ppomorsk (Talk | contribs) deleted page MPI Reduction for User Defined Data Types (content was: "== <center>MPI Reduction for User Defined Data Types </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@sharcnet.ca'''</center> <cente..." (and the only contributor was "Nickc"))
  • 10:05, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Solving Systems of Sparse Linear Equations (content was: "===<center>System of Linear Equations</center>=== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' (former SHARCNET staff)'''</center> __TOC__ A system of linear equations is best represented by using the matrix notation: :''...")
  • 10:05, 2 May 2019 Ppomorsk (Talk | contribs) deleted page INTERPRETERS vs COMPILERS (content was: "{{Template:Outdated}} ==<center>INTERPRETERS vs COMPILERS </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@sharcnet.ca'''</center> <..." (and the only contributor was "Nickc"))
  • 10:05, 2 May 2019 Ppomorsk (Talk | contribs) deleted page EIGENVALUES OF NON-SYMMETRIC MATRICES (content was: "<!--checked2016--> {{Template:Outdated}} == <center>EIGENVALUES OF NON-SYMMETRIC MATRICES </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail:..." (and the only contributor was "Nickc"))
  • 10:05, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Eigenproblem solved with PETSc SLEPc (content was: "<!--checked2016--> {{Template:Outdated}} == <center>Eigenproblem solved with PETSc_SLEPc </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@sharcnet.ca'''</center> <center>'''HPC Consultant - SHARCNET'''...")
  • 10:04, 2 May 2019 Ppomorsk (Talk | contribs) deleted page NAG LAPACK "extras" library (content was: "{{Template:Outdated}} ==<center>NAG LAPACK "extras" library </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@sharcnet.ca'''</center> <center>'''HPC Consultant - SHARCNET''' '''http://www.sharcnet.ca '...")
  • 10:04, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Complete FFTW Examples in C F90 OCTAVE and PETSc (content was: "{{Template:Outdated}} == <center>Complete FFTW Examples in C, F90, OCTAVE and PETSc </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@sharcnet.ca'''</center> <center>'''HPC Consultant - SHARCNET''' '''h...")
  • 10:04, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Advanced SBVP Example in C, F90, OCTAVE and PETSc (content was: "<!--checked2016--> {{Template:Outdated}} == <center>ADVANCED SBVP Example in C, F90, OCTAVE and PETSc </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@sharcnet.ca'''</center> <center>'''HPC Consultant -...")
  • 10:04, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Analytical Computation (content was: "<!--checked2016--> {{Template:Outdated}} ===<center>Defining Analytical Computation</center>=== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc..." (and the only contributor was "Nickc"))
  • 10:04, 2 May 2019 Ppomorsk (Talk | contribs) deleted page RUNGE-KUTTA Tutorial (content was: "{{Template:Outdated}} ===<center> RUNGE-KUTTA for ORDINARY DIFFERENTIAL EQUATIONS </center>=== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@..." (and the only contributor was "Nickc"))
  • 10:03, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Digital Humanities (content was: "{{Template:Outdated}} = Introduction = This page is intended to serve as a community and information hub for our digital humanities users. It is our hope that interested users and staff share tips and tricks, information about what th...")
  • 10:03, 2 May 2019 Ppomorsk (Talk | contribs) deleted page A Big Bridge: High Performance Computing and the Humanities (content was: "{{Template:Outdated}} This is the abstract of a paper to be presented at the 2008 Congress of the Humanities and Social Sciences Authors: * Geoffrey Rockwell - Associate Professor, Department of Communication Studies and Multimedia, M...")
  • 10:03, 2 May 2019 Ppomorsk (Talk | contribs) deleted page ATLAS (content was: "<!--checked2016--> {{Template:Outdated}} {{Software |package_name=ATLAS |package_description=Automatically Tuned Linear Algebra Software |package_idnumber=3 }} <b><font color=red>IMPORTANT NOTICE:</font> ATLAS will removed from all SHAR...")
  • 10:03, 2 May 2019 Ppomorsk (Talk | contribs) deleted page GSL (content was: "{{Template:GrahamUpdate}} <!--checked2016--> {{Template:Outdated}} {{Software |package_name=GSL |package_description=Mathematical routines to C/C++ programmers |package_idnumber=31 }} ==Examples== ===Example 1: Random Numbers from a Po...")
  • 10:02, 2 May 2019 Ppomorsk (Talk | contribs) deleted page MPICH2 (content was: "<!--checked2016--> {{Template:Outdated}} {{Software |package_name=MPICH2 |package_description=To provide an MPI implementation |package_idnumber=52 }} Mpich2 is not installed on sharcnet please use openmpi instead. <br> <br> <b>Legacy Us...")
  • 10:02, 2 May 2019 Ppomorsk (Talk | contribs) deleted page SPAI (content was: "{{Template:Outdated}} [http://www.computational.unibas.ch/software/spai/spaidoc.html SPAI – SParse Approximate Inverse Preconditioner] (MPI) Warning: the above link is dead. You can still find the source file (v.3.2) in my home direc...")
  • 10:01, 2 May 2019 Ppomorsk (Talk | contribs) deleted page TORQUE (content was: "{{Software |package_name=TORQUE |package_description=Resource manager for SHARCNET clusters |package_idnumber=92 }} <b><U>NATIVE TORQUE COMMANDS (all T&M clusters)</..." (and the only contributor was "Isaac"))
  • 09:59, 2 May 2019 Ppomorsk (Talk | contribs) deleted page IPM (content was: "{{Template:GrahamUpdate}} {{Software |package_name=IPM |package_description=Profiling library for parallel codes |package_idnumber=125 }} =Introduction= IPM (Integrated Performance Monitoring) is a portable profiling infrastructure for...")
  • 09:59, 2 May 2019 Ppomorsk (Talk | contribs) deleted page PATHSCALE (content was: "{{Template:LegacyPage}} {{Software |package_name=Pathscale |package_description=the Pathscale Compiler Suite |package_idnumber=44 }} =Introduction= Pathscale is a compiler. Presently SHARCNET provides version 4 of the compiler. It u...")
  • 09:59, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Quantifying the Importance of Horizontal Gene Transfer for Bacterial Genome Evolution (content was: "This project was conducted in the first round of SHARCNET's dedicated programming support competition. It mainly concerned developing a program that reads in the sequences of all genes present o...")
  • 09:58, 2 May 2019 Ppomorsk (Talk | contribs) deleted page ROOT (content was: "{{Template:Outdated}} ===about=== [http://root.cern.ch/drupal/ ROOT] ''The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficient way.'' ===instal...")
  • 09:58, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Unsupported Software Documentation (content was: "#REDIRECT Unsupported Software" (and the only contributor was "Roberpj"))
  • 09:57, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Software Resources (content was: "#REDIRECT Unsupported Software Documentation" (and the only contributor was "Merz"))
  • 09:56, 2 May 2019 Ppomorsk (Talk | contribs) deleted page UCSC Kent Utilities (content was: "{{Template:LegacyPage}} ==Overview== The "UCSC Kent Utilities" is a collection of utilities for performing genomics and related work that was used to build the web based [http://genome.ucsc.edu/cgi-bin/hgTracks?org=human UCSC Genome Bro...")
  • 09:54, 2 May 2019 Ppomorsk (Talk | contribs) deleted page MAFFT (content was: "{{Template:Outdated}} {{Template:LegacyPage}} '''Update November 2014''': These instructions were written for the older SHARCNET environment. It should be possible to build MAFFT for the present SHARCNET environment without any deviati...")
  • 09:54, 2 May 2019 Ppomorsk (Talk | contribs) deleted page LinBox (content was: "{{Template:Outdated}} {{Template:GrahamUpdate}} '''Update November 2014''': These instructions are from 2010 and were created for the SHARCNET environment at that time. It should be possible to install this software on the newer operat...")
  • 09:54, 2 May 2019 Ppomorsk (Talk | contribs) deleted page KmerGenie (content was: "=kmergenie-1.6741= Built successfully on orca under centos6.4 using the system GCC, see [https://www.sharcnet.ca/my/problems/ticket/23952 ticket 23952]. ssh orca.sharcnet.ca wget http://kmergenie.bx.psu.edu/kmergenie-1.6741.tar.gz t...")
  • 09:54, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Vi and vim configuration (content was: "This page is now included in the SHARCNET Vim Documentation page at: VIM#Configuration <!--checked2015-->")
  • 09:54, 2 May 2019 Ppomorsk (Talk | contribs) deleted page VIM (content was: "{{Software |package_name=VIM |package_description=Text editor |package_idnumber=100 }} =Introduction= The vim console text editor can be started by typing <i>vim</i>. A graphical version is also available on most Sharcnet systems: <...")
  • 09:53, 2 May 2019 Ppomorsk (Talk | contribs) deleted page OwnCloud (content was: "{{LegacyPage}} <div class="alert-info" style="margin-bottom: 10pt"> <div style="float:left; vertical-align:top; text-align: center; font-weight:bold; font-size: 3em; color: white; background-color: red; height: 0.8em; width: 1.2em; pad...")
  • 09:53, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Enzo (content was: "{{Template:Outdated}} =Introduction= Enzo is a parallel adaptive mesh refinement (AMR) grid-based code for simulating structure formation in the Universe. It..." (and the only contributor was "Razoumov"))
  • 09:52, 2 May 2019 Ppomorsk (Talk | contribs) deleted page HOOMD-blue (content was: "'''HOOMD-blue''' is a general-purpose particle simulation toolkit. It scales from a single CPU core to thousands of GPUs. =Install from git= Tested on Compute Canada cluster "graham" November 2017 by <ppomorsk@sharcnet.ca> <br> modul...")
  • 09:52, 2 May 2019 Ppomorsk (Talk | contribs) deleted page BINUTILS (content was: "{{Template:Outdated}} {{Software |package_name=BINUTILS |package_description=A collection of programming tools for the manipulation of object code |package_idnumber=114 }} =Intrduction= To load the most recent binutils module do: <pre...")
  • 09:52, 2 May 2019 Ppomorsk (Talk | contribs) deleted page COMPILE (content was: "<!--checked2016--> {{Template:Outdated}} {{Software |package_name=COMPILE |package_description=Provide "wrappers" that permit generic compilation |package_idnumber=129 }} compile is loaded by default in the SHARCNET user-environment/1.0...")
  • 09:52, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Cutadapt (content was: "{{template:LegacyPage}} read more about this package here: https://cutadapt.readthedocs.org/en/stable/ To install on kraken in my home directory I'd do: ssh kraken.sharcnet.ca module load python wget http://cutadapt.googlecode.com...")
  • 09:51, 2 May 2019 Ppomorsk (Talk | contribs) deleted page GRAPHVIZ (content was: "{{Template:GrahamUpdate}} {{Template:Outdated}} {{Software |package_name=GRAPHVIZ |package_description=Graph visualization software |package_idnumber=98 }} =Version Selection= Please refer to the documentation [http://www.graphviz.org/...")
  • 09:51, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Geneious (content was: "{{Template:LegacyPage}} This software was test installed for a group on the SHARCNET vdi-centos6 host in March 2015. There is a trial license which was not configured at the time. Please email help@sharcnet.ca if you need help setting...")
  • 09:50, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Glossary of Terms (content was: "{{Ancient|27402}} ===Barrier=== A synchronization point in parallel code where two or more threads must both reach before continuing. ===IDE=== Integrated Develop..." (and the only contributor was "Edward"))
  • 09:50, 2 May 2019 Ppomorsk (Talk | contribs) deleted page LDWRAPPER (content was: "{{LegacyPage}} <!--checked2016--> {{Software |package_name=LDWRAPPER |package_description=Wrapper for the sharcnet default centos6 module environment to ensure LD_RUN_PATH is used. |package_idnumber=165 }} =Introduction= The ldwrappe...")
  • 09:50, 2 May 2019 Ppomorsk (Talk | contribs) deleted page NCL (content was: "{{Template:GrahamUpdate}} {{Software |package_name=NCL |package_description=Visualization and analysis of molecular structures. |package_idnumber=183 }} =Introduction= Provides installation of NCL scripts from operating system reposit...")
  • 09:49, 2 May 2019 Ppomorsk (Talk | contribs) deleted page NOTEBOOK (content was: "This page has been superceeded by https://www.sharcnet.ca/help/index.php/JUPYTER" (and the only contributor was "Roberpj"))
  • 09:47, 2 May 2019 Ppomorsk (Talk | contribs) deleted page PORTLAND (content was: "#REDIRECT PGI" (and the only contributor was "Roberpj"))
  • 09:46, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Singular (content was: "{{Template:GrahamUpdate}} New instructions (December 2015) for orca, for git version of Singular module unload intel openmpi mkl module load gmp mpfr gcc cd /work/$USER mkdir SINGULAR cd SINGULAR wget http://www.mathematik.uni-k...")
  • 09:46, 2 May 2019 Ppomorsk (Talk | contribs) deleted page PyCUDA (content was: "<big>'''PyCUDA''' makes it possible to easily use CUDA inside Python code.</big> Documentation can be found on the [http://mathema.tician.de/software/pycuda pa..." (and the only contributor was "Ppomorsk"))
  • 09:46, 2 May 2019 Ppomorsk (Talk | contribs) deleted page PyOpenCL (content was: "<big>'''PyOpenCL''' makes it possible to easily use OpenCL inside Python code.</big> Documentation can be found on the [http://mathema.tician.de/software/pyopencl package webpage]. This package is not currently installed as SHARCNET-su...")
  • 09:44, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Unsupported Software (content was: "{{Template:LegacyPage}} =Unsupported Software= Package listed on this page are NOT included on the Officially [https://www.sharcnet.ca/my/software Supported] Sharcnet software page. __TOC__ ==User-Installed Packages== This table prov...")
  • 09:44, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Trilinos (content was: "{{Template:Outdated}} ==Newest instructions (August 2013, problem ticket https://www.sharcnet.ca/my/problems/ticket/21268 )== * orca, Centos 6.4, default compiler (inte..." (and the only contributor was "Syam"))
  • 09:43, 2 May 2019 Ppomorsk (Talk | contribs) deleted page UMFPACK (content was: "{{stub}}<br> Instruction to build UMFPACK have been given in 'README_Jemmy' file under /work/jemmyhu/software/umfpack/install_packages")
  • 09:43, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Transition to CentOS 6 (content was: "{{LegacyPage}} As of September 2013 most SHARCNET core, speciality and contributed systems that were running CentOS 5 have been upgraded to CentOS 6. As part of this upgrade we reorganized the default software environment and provide...")
  • 09:43, 2 May 2019 Ppomorsk (Talk | contribs) deleted page WIEN2K (content was: "<!--checked2016--> {{Template:Outdated}} {{Template:LegacyPage}} {{Software |package_name=WIEN2K |package_description=DFT simulation |package_license= Not free, users must purchase license |package_url=www.wien2k.at |package_idnumber= |...")
  • 09:42, 2 May 2019 Ppomorsk (Talk | contribs) deleted page GAMESS US (content was: "==Run instruction for Gamess_US on bull for serial jobs only == 1) create a subdirectory gamess_scr in your /scratch directory cd /scratch/youid mkdir gamess_scr 2) for first time user, add the path to your .bash_profile file you...")
  • 09:42, 2 May 2019 Ppomorsk (Talk | contribs) deleted page GCC (content was: "{{Template:GrahamUpdate}} {{Software |package_name=GCC |package_description=GNU compiler collection |package_idnumber=20 }} =Introduction= '''GCC''' is a free, open-source, very widely used compiler. While at SHARCNET it is usually best...")
  • 09:42, 2 May 2019 Ppomorsk (Talk | contribs) deleted page GNU (content was: "{{Software |package_name=GNU |package_description=Selected packages from the GNU project |package_idnumber=136 }} =Introduction= Sharcnet installs commonly used GNU packages from http://www.gnu.org/software/#allgnupkgs. =Version Selec...")
  • 09:41, 2 May 2019 Ppomorsk (Talk | contribs) deleted page IMAGEMAGICK (content was: "<!--checked2016--> {{Template:Outdated}} {{Software |package_name=IMAGE MAGICK |package_description=Suite for the creation, modification and display of bitmap images |package_idnumber=119 }} <u>COMMANDS</u> <b>convert</b> between imag...")
  • 09:40, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Iqaluk (content was: "{{System |cluster_name=iqaluk |target_usage=Large, tightly-coupled threaded jobs |system_idnumber=93 }} ==System Overview== {| class="wikitable" style="text-align:center" border="1" |- | Node Range || 1 |- | CPU Model || Intel Xeon X750...")
  • 09:39, 2 May 2019 Ppomorsk (Talk | contribs) deleted page PGI (content was: "{{GrahamUpdate}} {{Software |package_name=PGI |package_description=the Portland Group Compiler suite |package_idnumber=46 }} =Overview= '''Portland Group''' produces high-quality compilers that include certain unusual features, such as...")
  • 09:39, 2 May 2019 Ppomorsk (Talk | contribs) deleted page SLURM (content was: "'''SLURM''' (Simple Linux Utility for Resource Management) is a job scheduler. On SHARCNET it is currently in use on clusters: Graham, Copper, and Mosaic. (On Copper and Mosaic, users can use our legacy command ''sqsub'' to submit jobs...")
  • 09:39, 2 May 2019 Ppomorsk (Talk | contribs) deleted page SPRNG (content was: "{{Software |package_name=SPRNG |package_description=To develop, implement and test a scalable package for parallel pseudo random number generation |package_idnumber=50 }} If you are on a <b>cluster with modular install</b> (most of our c...")
  • 09:38, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Summer School preview (content was: "From May 28th to June 1st SHARCNET will run its annual Summer School on Advanced Research Computing, this time at Western University. This summer school will be our lar..." (and the only contributor was "Syam"))
  • 09:38, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Sunrise (content was: "{{Template:Outdated}} {{Template:LegacyPage}} 16-01-17 Many of the links on this page are dead, it this page will not be updated. '''Warning:''' This is an old page created by a staff who is no longer with SHARCNET. As re-testing of al...")
  • 09:38, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Storage systems (content was: "For information about storage, see the [https://docs.computecanada.ca/wiki/Storage_and_file_management/en Storage and file management page] on Compute Canada documentation wiki. Category:Systems")
  • 09:37, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Sqsub (content was: "{{LegacyPage}} ---- '''NAME''' sqsub - submit a job ---- '''SYNOPSIS''' sqsub [-r|W runtimelimit] [-o ofile] [-e efile] [-i ifile] [-t or --test] [-q queue] [-f flag] [-n ncpus] [-N nnodes] [--ppn processes-per-node] [--tpp t...")
  • 09:37, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Sqjobs (content was: "{{Template:LegacyPage}} ---- '''NAME''' sqjobs - show jobs ---- '''SYNOPSIS''' sqjobs [-a|--all][-u user] [-q][-r][-z][-d][--queue queuename][--command command-substring] [-l][-L] [-n][-s|--summary][--sort...")
  • 09:37, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Sqkill (content was: "{{Template:GrahamUpdate}} ---- '''NAME''' sqkill/suspend/resume - kill, suspend or resume jobs in scheduler. ---- '''SYNOPSIS''' sqkill [-a|--all][-r|--running][-q|--queued] jobid... sqsuspend jobid... sqresume jobid... Ex...")
  • 09:37, 2 May 2019 Ppomorsk (Talk | contribs) deleted page SQ (content was: "{{Template:LegacyPage}} {{Software |package_name=SQ |package_description=A set of generic tools for submitting and managing jobs on SHARCNET clusters. |package_idnumber=130 }} =Introduction= To submit a job, certain basic information...")
  • 09:36, 2 May 2019 Ppomorsk (Talk | contribs) deleted page OPEN64 (content was: "{{Template:LegacyPage}} {{Software |package_name=Open64 |package_description= the open64 compiler suite |package_idnumber=81 }} =Introduction= Provides a free compiler alternative on sharcnet systems with openmpi support. =Version Sel...")
  • 09:36, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Mosaic (content was: "{{System |cluster_name=mosaic |target_usage=serial and/or small threaded/mpi jobs, GPU jobs |system_idnumber=106 }} == Hardware == * nodes 1 - 20 ** 20 CPU cores ** one NVIDIA Tesla K20m GPU (Compute capability: 3.5) ** memory: 256.0...")
  • 09:36, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Getting Started with Compiling Code on SHARCNET (content was: "<!--checked2016--> {{Template:GrahamUpdate}} == Objective == The purpose of this guide is to give a quick step-by-step introduction to compiling and running code on SHARCNET clusters. Specifically, we will go through the steps necessary...")
  • 09:35, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Orca (content was: "'''NOTE''' - Orca has been decommissioned on March 29, 2019. Only the login node will remain accessible for a few weeks afterwards so that users can migrate their data out of /scratch. Data in /home and /work will be accessible from oth...")
  • 09:35, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Monk (content was: "The monk cluster has been retired at the end of March, 2019. {{System |cluster_name=monk |target_usage=GPU jobs |system_idnumber=82 }} Category:Systems Decommissioned")
  • 09:34, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Goblin (content was: "{{System |cluster_name=goblin |target_usage=General purpose |system_idnumber=5 }} ==System Overview== {| class="wikitable" style="text-align:center" border="1" |- | Node Range || 1-15 || 16-20 || 21-36 || 37-48 || 49 || 50 || 51-54 |-...")
  • 09:34, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Graham (content was: "300px 300px 250px '''IMPORTANT''': to login to Graham, you have to use your Compute Canada credentials (login name and password), not your SHARCNET credentials! Graham is...")
  • 09:33, 2 May 2019 Ppomorsk (Talk | contribs) deleted page FEniCS (content was: "The FEniCS Project is a collection of free software with an extensive list of features for automated, efficient solution of differential equations. Link: http://fenicsproject.org/ At present SHARCNET helps users install this package in...")
  • 09:32, 2 May 2019 Ppomorsk (Talk | contribs) deleted page TINKER (content was: "{{Software |package_name=TINKER |package_description=Software Tools for Molecular Design |package_idnumber=147 }} =Introduction= Provides a multi-threaded build of the tinker package with the intel compiler. =Version Selection= <pre>...")
  • 09:29, 2 May 2019 Ppomorsk (Talk | contribs) deleted page SIMPSON (content was: "=Usage on new Compute Canada clusters= This software has not yet been installed on the new clusters cedar and graham. If that should be required, please email help@sharcnet.ca.")
  • 09:29, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Python (content was: "{{Software |package_name=Python |package_description=Powerful Dynamic Programming Language (includes mpi4py and numpy) |package_idnumber=108 }} For information on how to use Python on Compute Canada systems, please go to [https://docs....")
  • 09:28, 2 May 2019 Ppomorsk (Talk | contribs) deleted page NAMD (content was: "{{Software |package_name=NAMD |package_description=Parallel Molecular Dynamics Program |package_idnumber=41 }} Please see the [https://docs.computecanada.ca/wiki/NAMD documentation page on Compute Canada wiki]")
  • 09:28, 2 May 2019 Ppomorsk (Talk | contribs) deleted page GROMACS (content was: "{{Software |package_name=GROMACS |package_description=Molecular Dynamics for Biomolecular Systems |package_idnumber=13 }} Please see the [https://docs.computecanada.ca/wiki/GROMACS page on Compute Canada wiki]")
  • 09:26, 2 May 2019 Ppomorsk (Talk | contribs) deleted page DLPOLY (content was: "{{Software |package_name=DLPOLY |package_description=Suite of programs that allow users to carry out molecular dynamics simulations |package_idnumber=73 }} For documentation, consult the [https://docs.computecanada.ca/wiki/DL_POLY DL POL...")
  • 07:49, 30 April 2019 Syam (Talk | contribs) uploaded File:Twitter-icon-65.png
  • 07:33, 30 April 2019 Syam (Talk | contribs) uploaded File:ComputeCalculOntario LOGO 300dpi RGB.png
  • 19:35, 29 April 2019 Syam (Talk | contribs) uploaded a new version of File:Graham summer school.png
  • 19:03, 29 April 2019 Syam (Talk | contribs) uploaded File:Information.png
  • 18:48, 29 April 2019 Syam (Talk | contribs) uploaded File:Register here.png
  • 11:03, 29 April 2019 Syam (Talk | contribs) uploaded a new version of File:Graham summer school.png
  • 10:36, 29 April 2019 Syam (Talk | contribs) uploaded File:Summer school.png
  • 10:35, 29 April 2019 Syam (Talk | contribs) uploaded File:Register.png
  • 09:55, 29 April 2019 Syam (Talk | contribs) uploaded File:Graham summer school.png
  • 09:42, 29 April 2019 Syam (Talk | contribs) uploaded File:Graham.png
  • 10:33, 24 April 2019 Ppomorsk (Talk | contribs) deleted page Gulf (content was: "#REDIRECT Storage systems")
  • 10:32, 24 April 2019 Ppomorsk (Talk | contribs) deleted page Archive (content was: "#REDIRECT Storage systems" (and the only contributor was "Isaac"))
  • 10:32, 23 April 2019 Ppomorsk (Talk | contribs) deleted page OPT (content was: "<!--checked2016--> OPT is an outdated package and is no longer installed in SHARCNET. It was superceded by a much better profiler [https://www.sharcnet.ca/my/software/show/145 MAP].")
  • 10:27, 23 April 2019 Ppomorsk (Talk | contribs) deleted page Mako (content was: "{{LegacyPage}} <!--checked2015--> <!--checked2016--> {{System |cluster_name=mako |target_usage= |system_idnumber=39 }} Category:Systems ==System overview== This cluster is installed at the University of Guelph. The login node c...")
  • 10:27, 23 April 2019 Ppomorsk (Talk | contribs) deleted page Guppy (content was: "{{System |cluster_name=guppy |target_usage=serial and/or small threaded/mpi jobs |system_idnumber=70 }} ===About=== Guppy is a contributed system, which means that the contributors have priority access to the system. Note that contri...")
  • 10:25, 23 April 2019 Ppomorsk (Talk | contribs) deleted page ListOfSystem (content was: "{{Template:LegacyPage}} =Systems= {| border="1" cellpadding="2" cellspacing="0" ! style="background:#8AA8E5;" | Specialty Systems ! style="background:#ECCF98;" | Target Utilization |- |kraken |compute cluster |- |Orca |orc...")
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