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(newest | oldest) View (newer 100 | older 100) (20 | 50 | 100 | 250 | 500)- 13:22, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Yambo (content was: "{{Template:GrahamUpdate}} Jemmy Hu, Oct. 18, 2016 Steps to build Yambo on Sharcnet 1) using the default the environment settings [jemmyhu@saw-login1:~/work/software/yambo/4.0.4] module list Currently Loaded Modulefiles: 1) torque/...")
- 13:21, 13 May 2019 Ppomorsk (Talk | contribs) deleted page XCRYSDEN (content was: "{{Software |package_name=XCRYSDEN |package_description=Visualization software |package_idnumber=94 }} = XCrySDen on Cedar and Graham= On cedar and graham XCrySDen is installed as a module. To use it, connect with the graphical interfa...")
- 13:20, 13 May 2019 Ppomorsk (Talk | contribs) deleted page SeqAn (content was: "{{Template:GrahamUpdate}} =Software Information= SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. * URL: http://www.seqan.de/ * Downloads:...")
- 13:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page ILOGCPLEX (content was: "{{Template:GrahamUpdate}} {{Software |package_name=ILOGCPLEX |package_description=A component of IBM ILOG CPLEX Optimization Studio |package_idnumber=109 }} =Introduction= Users must join first the <i>ilogcplex</i> group before the sof...")
- 12:38, 13 May 2019 Ppomorsk (Talk | contribs) deleted page OPENMPI (content was: "{{Software |package_name=OPENMPI |package_description=Implementation of MPI-1 and MPI-2 message passing standards |package_idnumber=5 }} =Compute Canada Clusters= The default module version of OpenMPI on cedar, graham and new-orca is v...")
- 12:35, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Wise2/Genewise (content was: "This software is related to ticket 24610[https://www.sharcnet.ca/my/problems/ticket/24610] and ticket 25036[https://www.sharcnet.ca/my/problems/ticket/25036] To build wise2, you should start with unzipping the tar file, then the "glib-c...")
- 12:35, 13 May 2019 Ppomorsk (Talk | contribs) deleted page YAML-CPP (content was: "{{LegacyPage}} =0.5.2= The following installation instructions are based on https://github.com/jbeder/yaml-cpp/blob/master/install.txt Apr27,2015 <doug@sharcnet.ca>: ===System Installs=== Both yamp-cpp and yamp-cpp-devel repository...")
- 12:32, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Transposome (content was: "<!-- Checked 2019 Ed --> =Software Information= Transposome is a toolkit for annotation of transposable element families from unassembled sequence reads. * URL: http://sestaton.github.io/Transposome * Git: https://github.com/sestaton/T...")
- 12:32, 13 May 2019 Ppomorsk (Talk | contribs) deleted page FSL (content was: "<!--checked2016--> == General Info == [http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/ FSL website] FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. It runs on Apple and PCs (both Linux, and Windows via...")
- 12:31, 13 May 2019 Ppomorsk (Talk | contribs) deleted page VASP (content was: "{{Template:GrahamUpdate}} <big>'''VASP''': The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from...")
- 12:29, 13 May 2019 Ppomorsk (Talk | contribs) deleted page NETCDF (content was: "{{GrahamUpdate}} {{Software |package_name=NETCDF |package_description=An interface for array-oriented data access and a library that provides an implementation of the interface |package_idnumber=18 }} =Introduction= Provides NetCDF for...")
- 12:27, 13 May 2019 Ppomorsk (Talk | contribs) deleted page PARPACK (content was: "#REDIRECT ARPACK-NG" (and the only contributor was "Roberpj"))
- 12:25, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MrBAYES (content was: "{{Software |package_name=MrBAYES |package_description=Bayesian estimation of phylogeny |package_idnumber=37 }} =Introduction= MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evoluti...")
- 12:25, 13 May 2019 Ppomorsk (Talk | contribs) deleted page RLWRAP (content was: "{{Software |package_name=RLWRAP |package_description=A small utility that uses the GNU readline library |package_idnumber=124 }} =Usage on new Compute Canada clusters= This software has not yet been installed on the new clusters cedar a...")
- 12:24, 13 May 2019 Ppomorsk (Talk | contribs) deleted page GlimmerHMM (content was: "<!--checked2016--> =3.0.1= This document explains howto compile 64bit binaries for GlimmerHMM to run on sharcnet clusters. Provided by doug@sharcnet.ca 26jun201..." (and the only contributor was "Roberpj"))
- 12:24, 13 May 2019 Ppomorsk (Talk | contribs) deleted page GAP (content was: "{{Software |package_name=GAP |package_description=System for computational discrete algebra. |package_idnumber=139 }} =Usage on new Compute Canada clusters= This software has not yet been installed on the new clusters cedar and graham....")
- 12:23, 13 May 2019 Ppomorsk (Talk | contribs) deleted page FFTW (content was: "{{Software |package_name=FFTW |package_description=library |package_idnumber=14 }} ==Introduction== FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and...")
- 12:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page RUBY (content was: "{{Template:GrahamUpdate}} {{Software |package_name=RUBY |package_description=An open source programming language with a focus on simplicity and productivity |pack..." (and the only contributor was "Roberpj"))
- 12:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MGLTOOLS (content was: "{{Software |package_name=MGLTOOLS |package_description=Visualization and analysis of molecular structures. |package_idnumber=176 }} =Usage on new Compute Canada clusters= This software has not yet been installed on the new clusters ced...")
- 12:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page LRS (content was: "{{Template:LegacyPage}} =060= * This wiki shows howto compile MPLRS following the source <i>readme</i> file. Posted by <doug@sharcnet.ca> 24sep2015. <pre> ssh iqaluk.sharcnet.ca module unload intel openmpi mkl module load intel/15.0.3...")
- 15:26, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17837 of page BIOPERL patrolled
- 15:25, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17836 of page BIOPERL patrolled
- 15:22, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17835 of page BIOPERL patrolled
- 15:19, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17834 of page BIOPERL patrolled
- 15:17, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17833 of page BIOPERL patrolled
- 15:16, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17832 of page AMICA patrolled
- 16:30, 10 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17831 of page ABAQUS patrolled
- 16:30, 10 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17830 of page ABAQUS patrolled
- 16:30, 10 May 2019 Ppomorsk (Talk | contribs) restored page ABAQUS (325 revisions restored: turns out this is still needed on remaining legacy systems)
- 16:28, 10 May 2019 Fm (Talk | contribs) changed group membership for User:Ppomorsk from (none) to administrator
- 12:23, 10 May 2019 Ppomorsk (Talk | contribs) deleted page Template:Ancient 27047 (content was: "{| cellpadding=5 style="border:4px solid #CD5C5C" |- bgcolor="#FFDAB9" | This page is flagged as an 'ancient wiki page' and is under review in ticket {{{1}}}. |} __..." (and the only contributor was "Edward"))
- 16:42, 9 May 2019 Ppomorsk (Talk | contribs) deleted page NCBI/C++TOOLKIT (content was: "#REDIRECT NCBIC++TOOLKIT" (and the only contributor was "Roberpj"))
- 16:40, 9 May 2019 Ppomorsk (Talk | contribs) deleted page LUMERICAL (content was: "#REDIRECT FDTD" (and the only contributor was "Roberpj"))
- 16:40, 9 May 2019 Ppomorsk (Talk | contribs) deleted page LS-DYNA (content was: "#REDIRECT LSDYNA" (and the only contributor was "Roberpj"))
- 16:39, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Usearch (content was: "#REDIRECT Panda-qiime {{GrahamUpdate}}")
- 16:39, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Git (content was: "#REDIRECT GIT" (and the only contributor was "Tyson"))
- 16:37, 9 May 2019 Ppomorsk (Talk | contribs) deleted page GIT (content was: "#REDIRECT Using Git" (and the only contributor was "Ppomorsk"))
- 16:36, 9 May 2019 Ppomorsk (Talk | contribs) deleted page SUBVERSION (content was: "#REDIRECT Using Subversion" (and the only contributor was "Ppomorsk"))
- 16:36, 9 May 2019 Ppomorsk (Talk | contribs) moved page SUBVERSION to Using Subversion
- 16:33, 9 May 2019 Ppomorsk (Talk | contribs) moved page GIT to Using Git
- 16:10, 9 May 2019 Ppomorsk (Talk | contribs) deleted page GNUPLOT (content was: "#REDIRECT Using gnuplot" (and the only contributor was "Ppomorsk"))
- 16:06, 9 May 2019 Ppomorsk (Talk | contribs) moved page GNUPLOT to Using gnuplot (make this a tutorial)
- 16:02, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Using parallel I/O in SHARCNET (content was: "#REDIRECT Webinar 2015 Using parallel I/O in SHARCNET" (and the only contributor was "Edward"))
- 16:01, 9 May 2019 Ppomorsk (Talk | contribs) deleted page ParaView (content was: "#REDIRECT Visualization of 2D and 3D datasets with ParaView" (and the only contributor was "Razoumov"))
- 16:00, 9 May 2019 Ppomorsk (Talk | contribs) deleted page OpenFOAM (content was: "#REDIRECT OPENFOAM" (and the only contributor was "Roberpj"))
- 15:56, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Sshfuse (content was: "#REDIRECT SSHFS" (and the only contributor was "Edward"))
- 15:56, 9 May 2019 Ppomorsk (Talk | contribs) deleted page SPARK (content was: "#REDIRECT Apache Spark")
- 15:54, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Deploying a web server. (content was: "#REDIRECT Deploying a web server" (and the only contributor was "Preney"))
- 15:53, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Grass (content was: "{{Template:LegacyPage}} == Installing GRASS == This page describes GRASS installation on one of our visualization workstations. Choose GRASS installation directory export GRASSDIR=/work/username/grass Next download and compile PROJ4...")
- 15:51, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Astrophysics (content was: "#REDIRECT Astrophysics Portal" (and the only contributor was "Tyson"))
- 15:51, 9 May 2019 Ppomorsk (Talk | contribs) deleted page SHARCNET Astrophysics Portal (content was: "#REDIRECT Astrophysics" (and the only contributor was "Tyson"))
- 15:49, 9 May 2019 Ppomorsk (Talk | contribs) deleted page PETSc SLEPc (content was: "#REDIRECT PETSC SLEPC" (and the only contributor was "Roberpj"))
- 15:49, 9 May 2019 Ppomorsk (Talk | contribs) deleted page MrBayes (content was: "#REDIRECT MrBAYES")
- 15:49, 9 May 2019 Ppomorsk (Talk | contribs) deleted page PANDAseq (content was: "#REDIRECT Panda-qiime" (and the only contributor was "Edward"))
- 15:49, 9 May 2019 Ppomorsk (Talk | contribs) deleted page OpenCL (content was: "#REDIRECT OPENCL" (and the only contributor was "Roberpj"))
- 15:48, 9 May 2019 Ppomorsk (Talk | contribs) deleted page OpenMPI (content was: "#REDIRECT OPENMPI" (and the only contributor was "Roberpj"))
- 15:47, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Panda (content was: "#REDIRECT panda-qiime" (and the only contributor was "Edward"))
- 15:47, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Qiime (content was: "#REDIRECT panda-qiime" (and the only contributor was "Edward"))
- 15:47, 9 May 2019 Ppomorsk (Talk | contribs) deleted page SAMtools (content was: "#REDIRECT SAMTOOLS" (and the only contributor was "Roberpj"))
- 15:46, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Signal Handling (content was: "#REDIRECT Signal Handling and Checkpointing" (and the only contributor was "Dbm"))
- 15:46, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Remote X Connections to Sharcnet (content was: "#REDIRECT Remote Graphical Connections" (and the only contributor was "Tyson"))
- 15:45, 9 May 2019 Ppomorsk (Talk | contribs) deleted page XCrySDen (content was: "#REDIRECT XCRYSDEN" (and the only contributor was "Roberpj"))
- 15:44, 9 May 2019 Ppomorsk (Talk | contribs) deleted page VisIt (content was: "#REDIRECT VISIT" (and the only contributor was "Roberpj"))
- 15:43, 9 May 2019 Ppomorsk (Talk | contribs) deleted page Remote File Access (content was: "{{Template:GrahamUpdate}} Note: this is a placeholder under development File management between SHARCNET systems and user's personal storage has always presented certain challenges, depending on the individual user's level of sophistic...")
- 15:42, 9 May 2019 Ppomorsk (Talk | contribs) deleted page NetCDF (content was: "#REDIRECT NETCDF" (and the only contributor was "Roberpj"))
- 15:42, 9 May 2019 Ppomorsk (Talk | contribs) deleted page ILOG/CPLEX (content was: "#REDIRECT ILOGCPLEX" (and the only contributor was "Roberpj"))
- 14:27, 9 May 2019 Ppomorsk (Talk | contribs) deleted page PERL (content was: "{{Delete}}")
- 15:39, 8 May 2019 Fm (Talk | contribs) deleted page ITK (re-deleted after undelete test)
- 15:37, 8 May 2019 Fm (Talk | contribs) restored page ITK (8 revisions restored: test undelete)
- 13:56, 8 May 2019 Ppomorsk (Talk | contribs) deleted page Improving your Python programs with NumPy and SciPy (content was: "#REDIRECT Webinar 2018 Improving your Python programs with NumPy and SciPy" (and the only contributor was "Ppomorsk"))
- 13:55, 8 May 2019 Ppomorsk (Talk | contribs) moved page Improving your Python programs with NumPy and SciPy to Webinar 2018 Improving your Python programs with NumPy and SciPy
- 13:54, 8 May 2019 Ppomorsk (Talk | contribs) deleted page ITK (content was: "{{Template:LegacyPage}} Insight Segmentation and Registration Toolkit (http://www.itk.org) is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis. The steps below ou...")
- 13:53, 8 May 2019 Ppomorsk (Talk | contribs) deleted page ABAQUS (content was: "{{Delete|obsolete}}")
- 13:53, 8 May 2019 Ppomorsk (Talk | contribs) deleted page ABINIT (content was: "{{delete|obsolete}}")
- 13:52, 8 May 2019 Ppomorsk (Talk | contribs) deleted page ADF/BAND (content was: "{{delete|obsolete}}")
- 13:52, 8 May 2019 Ppomorsk (Talk | contribs) deleted page AMBER (content was: "{{delete|obsolete}}")
- 12:55, 6 May 2019 Ppomorsk (Talk | contribs) deleted page VESTA (content was: "{{Delete|obsolete}}")
- 12:55, 6 May 2019 Ppomorsk (Talk | contribs) deleted page Big Data (content was: "{{Delete|obsolete}}")
- 12:54, 6 May 2019 Ppomorsk (Talk | contribs) deleted page MAX3D: Visualization of Reciprocal Space (content was: "{{Delete|obsolete}}")
- 10:15, 6 May 2019 Edward (Talk | contribs) moved page Managing your files effectively at SHARCNET with SVN to Webinar 2014 Managing your files effectively at SHARCNET with SVN
- 10:14, 6 May 2019 Edward (Talk | contribs) moved page Using parallel I/O in SHARCNET to Webinar 2015 Using parallel I/O in SHARCNET
- 10:25, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Supported Software Usage Documentation (content was: "#REDIRECT Supported Software Documentation" (and the only contributor was "Merz"))
- 10:24, 3 May 2019 Ppomorsk (Talk | contribs) deleted page SYSTEM (content was: "{{Software |package_name=SYSTEM |package_description=Updated select system packages compiled with the gcc system compiler |package_idnumber=188 }} =Introduction=..." (and the only contributor was "Roberpj"))
- 10:21, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Web portal (content was: "#REDIRECT Wiki tips and hints")
- 10:18, 3 May 2019 Ppomorsk (Talk | contribs) deleted page OpenSees (content was: "'''OpenSees''' (Open System for Earthquake Engineering Simulation) is a software framework for simulating the seismic response of structural and geotechnical systems. It has advanced capabilities for modeling and analyzing the nonlinea...")
- 10:15, 3 May 2019 Ppomorsk (Talk | contribs) deleted page OpenACC (content was: "{{Software |package_name=OpenACC |package_description=OpenACC - standard for parallel computing on heterogeneous systems (with GPGPUs) |package_idnumber= }} OpenACC is a programming standard for parallel computing, designed to simplify...")
- 10:14, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Software (content was: "==Software== * Configuring your software environment with Modules * Supported Software Documentation (usage information for SHARCNET supported software) * Unsupported Software Documentation (documentation for unsupported soft...")
- 10:13, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Supported Software Documentation (content was: "{{Template:LegacyPage}} SHARCNET provides official support, including installing and maintaining the software, for a limited number of supported software packages. In addition, we also provide documentation that we and our user communit...")
- 10:13, 3 May 2019 Ppomorsk (Talk | contribs) deleted page HDFVIEW (content was: "{{Software |package_name=HDFVIEW |package_description=Visual Tool for Browsing and Editing HDF4 and HDF5 files. |package_idnumber=134 }} =Usage on new Compute Canada clusters= This software has not yet been installed on the new clusters...")
- 10:13, 3 May 2019 Ppomorsk (Talk | contribs) deleted page JALVIEW (content was: "{{Software |package_name=JALVIEW |package_description=Bioinformatic visualization package |package_idnumber=174 }} =Introduction= Provides a manual binary insta..." (and the only contributor was "Roberpj"))
- 10:13, 3 May 2019 Ppomorsk (Talk | contribs) deleted page EMACS (content was: "{{Software |package_name=EMACS |package_description=Text editor and much much more. |package_idnumber=175 }} =Introduction= The sharcnet module provides a newer..." (and the only contributor was "Roberpj"))
- 10:13, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Bowtie2 (content was: " <big>'''Bowtie 2''' is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. ==Using Bowtie2 on Graham== Bowtie2 is installed as a module on Graham. <pre> module load bowtie2 </pre> After l...")
- 10:12, 3 May 2019 Ppomorsk (Talk | contribs) deleted page GEOS (content was: "{{stub}} == General Info == GEOS http://trac.osgeo.org/geos/ was installed as a dependency for http://cran.r-project.org/web/packages/indicspecies/index.html == Version 3.4.2 == Version 3.4.2 was available on vdi-fedora20.user.sharcn...")
- 10:12, 3 May 2019 Ppomorsk (Talk | contribs) deleted page GDB (content was: "{{Software |package_name=GDB |package_description=GDB https://www.gnu.org/software/gdb/ for debugging C, C++, Objective-C, Pascal and many more languages. |packag..." (and the only contributor was "Roberpj"))
- 10:12, 3 May 2019 Ppomorsk (Talk | contribs) deleted page R (content was: "{{Software |package_name=R |package_description=a language and environment for statistical computing and graphics |package_idnumber=8 }} The documentation for using R on Compute Canada systems is available [https://docs.computecanada.ca...")
- 10:11, 3 May 2019 Ppomorsk (Talk | contribs) deleted page NINJA (content was: "{{Software |package_name=NINJA |package_description=A small build system with a focus on speed. |package_idnumber=186 }} =Version Selection= <pre>module load ni..." (and the only contributor was "Roberpj"))
- 10:11, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Using R and MPI (content was: " See documentation on [https://docs.computecanada.ca/wiki/R#Exploiting_parallelism_in_R Compute Canada Wiki]. The obsolete information previously on this page is available in the history of this article.")
- 10:11, 3 May 2019 Ppomorsk (Talk | contribs) deleted page LAMMPS (content was: "{{Software |package_name=LAMMPS |package_description=Large-scale Atomic/Molecular Massively Parallel Simulator |package_idnumber=63 }} Up to date information about running LAMMPS is available on [https://docs.computecanada.ca/wiki/LAMMP...")
- 10:10, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Hardware (content was: "==Hardware== * Hardware/System Resources (online reference of all documented systems) <!--* Current wait time distribution on core systems--> * NVIDIA K20/K80 GPU")
- 10:10, 3 May 2019 Ppomorsk (Talk | contribs) deleted page Scientific Computing (content was: "==Scientific Computing== * Solving Systems of Sparse Linear Equations (self-directed tutorial) * Using BLAS (LAPACK) routines with QD precision (62 digits). * LAPACK and ScaLAPACK Examples * INTERPRETERS vs COMPILERS *...")