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<U>AVAILABLE BINARY PROGRAMS</U>
 
<U>AVAILABLE BINARY PROGRAMS</U>
  
To see a listing of the available 444 binary programs run the ls command:
+
To see a listing of the available 754 binary programs run the <i>ls</i> command:
 
<pre>
 
<pre>
[roberpj@iqaluk:/opt/sharcnet/ncbic++toolkit/9.0.0/bin] ls
+
[roberpj@orc-login2:/opt/sharcnet/ncbic++toolkit/18.0.0/gcc630/bin] ls
 +
</pre>
 +
 
 +
For example to see the blast binaries available run:
 +
 
 +
<pre>
 +
[roberpj@orc-login2:/opt/sharcnet/ncbic++toolkit/18.0.0/gcc630/bin] ls *blast*
 +
blast_dataloader_unit_test  blastinput_unit_test      magicblast_unit_test
 +
blastdb_aliastool          blastn                    makeblastdb
 +
blastdbcheck                blastoptions_unit_test    phiblast_unit_test
 +
blastdbcmd                  blastp                    psiblast
 +
blastdbcp                  blast_sample              psiblast_iteration_unit_test
 +
blastdb_format_unit_test    blast_services_unit_test  psiblast_unit_test
 +
blast_demo                  blastsetup_unit_test      remote_blast_demo
 +
blastdiag_unit_test        blast_tabular_unit_test  remote_blast_unit_test
 +
blastengine_unit_test      blast_unit_test          rmblastn
 +
blastextend_unit_test      blastx                    rpsblast
 +
blastfilter_unit_test      convert2blastmask        rpstblastn
 +
blast_formatter            deltablast                tblastn
 +
blast_format_unit_test      igblastn                  tblastx
 +
blasthits_unit_test        igblastp                  update_blastdb.pl
 +
blastinput_demo            legacy_blast.pl
 +
[roberpj@orc-login2:/opt/sharcnet/ncbic++toolkit/18.0.0/gcc630/bin]
 
</pre>
 
</pre>
  

Revision as of 19:28, 1 May 2017

Note: This page hasn't been updated for a long time, and is most likely outdated.
If you need it to be updated, please submit a ticket to help@sharcnet.ca with the link to the page.

Contents

NCBI C++ TOOLKIT
Description: Provides free, portable, public domain libraries with no restrictions use
SHARCNET Package information: see NCBI C++ TOOLKIT software page in web portal
Full list of SHARCNET supported software


LOADING THE MODULE

To load the latest (and only) installed version do:

module load ncbic++toolkit

AVAILABLE BINARY PROGRAMS

To see a listing of the available 754 binary programs run the ls command:

[roberpj@orc-login2:/opt/sharcnet/ncbic++toolkit/18.0.0/gcc630/bin] ls

For example to see the blast binaries available run:

[roberpj@orc-login2:/opt/sharcnet/ncbic++toolkit/18.0.0/gcc630/bin] ls *blast*
blast_dataloader_unit_test  blastinput_unit_test      magicblast_unit_test
blastdb_aliastool           blastn                    makeblastdb
blastdbcheck                blastoptions_unit_test    phiblast_unit_test
blastdbcmd                  blastp                    psiblast
blastdbcp                   blast_sample              psiblast_iteration_unit_test
blastdb_format_unit_test    blast_services_unit_test  psiblast_unit_test
blast_demo                  blastsetup_unit_test      remote_blast_demo
blastdiag_unit_test         blast_tabular_unit_test   remote_blast_unit_test
blastengine_unit_test       blast_unit_test           rmblastn
blastextend_unit_test       blastx                    rpsblast
blastfilter_unit_test       convert2blastmask         rpstblastn
blast_formatter             deltablast                tblastn
blast_format_unit_test      igblastn                  tblastx
blasthits_unit_test         igblastp                  update_blastdb.pl
blastinput_demo             legacy_blast.pl
[roberpj@orc-login2:/opt/sharcnet/ncbic++toolkit/18.0.0/gcc630/bin]

References

o NCBI C++ Toolkit Homepage
http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/