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Note: This page's content only applies to the SHARCNET's legacy systems; it does not apply to Graham.

read more about this package here: https://cutadapt.readthedocs.org/en/stable/

To install on kraken in my home directory I'd do:

ssh kraken.sharcnet.ca
module load python
wget http://cutadapt.googlecode.com/files/cutadapt-1.2.1.tar.gz
tar -xvzf cutadapt-1.2.1.tar.gz
cd cutadapt-1.2.1
python setup.py build
bin/cutadapt --version

This last command should return "1.2.1".

Note that you'll have to load the python module every time you want to use cutadapt - you can add that line to your ~/.bashrc to ensure it is loaded every time you log into the systems.