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User:Ppomorsk/Software - Revision history
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https://www.sharcnet.ca/help/index.php?title=User:Ppomorsk/Software&diff=4177&oldid=prev
Ppomorsk: /* Compile FEniCS on iqaluk */
2012-06-14T20:08:05Z
<p><span dir="auto"><span class="autocomment">Compile FEniCS on iqaluk</span></span></p>
<table class='diff diff-contentalign-left'>
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<col class='diff-marker' />
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 20:08, 14 June 2012</td>
</tr><tr><td colspan="2" class="diff-lineno" id="L43" >Line 43:</td>
<td colspan="2" class="diff-lineno">Line 43:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>default BOOST_USE_MULTITHREADED=OFF</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>default BOOST_USE_MULTITHREADED=OFF</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div></source></div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div></source></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Remove vtk from list of packages to be installed (but keep vtkdata)</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">(in this way FEniCS will use a Boost library compiled separately)</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">'''</ins>Remove<ins class="diffchange diffchange-inline">''' </ins>vtk from list of packages to be installed (but keep vtkdata)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>Modify the dorsal.cfg file, specify Work directory .  Then run dorsal.</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>Modify the dorsal.cfg file, specify Work directory .  Then run dorsal.</div></td></tr>
</table>
Ppomorsk
https://www.sharcnet.ca/help/index.php?title=User:Ppomorsk/Software&diff=4175&oldid=prev
Ppomorsk: /* Compile FEniCS on iqaluk */
2012-06-14T19:52:28Z
<p><span dir="auto"><span class="autocomment">Compile FEniCS on iqaluk</span></span></p>
<table class='diff diff-contentalign-left'>
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr style='vertical-align: top;'>
<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 19:52, 14 June 2012</td>
</tr><tr><td colspan="2" class="diff-lineno" id="L25" >Line 25:</td>
<td colspan="2" class="diff-lineno">Line 25:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>This enables the openmpi library.</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>This enables the openmpi library.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Install using dorsal.  Download <del class="diffchange diffchange-inline">dorsal01</del>.0.0 and unpack it (somewhere in /tmp for fast compile), cd into it:</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Install using dorsal.  Download <ins class="diffchange diffchange-inline">dorsal-1</ins>.0.0 and unpack it (somewhere in /tmp for fast compile), cd into it:</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div><source lang="bash"></div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div><source lang="bash"></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>cp FEniCS/platforms/supported/rhel6.platform  FEniCS/platforms/supported/rhel6iqaluk.platform  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>cp FEniCS/platforms/supported/rhel6.platform  FEniCS/platforms/supported/rhel6iqaluk.platform  </div></td></tr>
<tr><td colspan="2" class="diff-lineno" id="L43" >Line 43:</td>
<td colspan="2" class="diff-lineno">Line 43:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>default BOOST_USE_MULTITHREADED=OFF</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>default BOOST_USE_MULTITHREADED=OFF</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div></source></div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div></source></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Remove vtk from list of <del class="diffchange diffchange-inline">package </del>to be installed (but keep vtkdata)</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Remove vtk from list of <ins class="diffchange diffchange-inline">packages </ins>to be installed (but keep vtkdata)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>Modify the dorsal.cfg file, specify Work directory .  Then run dorsal.</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>Modify the dorsal.cfg file, specify Work directory .  Then run dorsal.</div></td></tr>
</table>
Ppomorsk
https://www.sharcnet.ca/help/index.php?title=User:Ppomorsk/Software&diff=4174&oldid=prev
Ppomorsk: FEniCS instructions
2012-06-14T19:50:33Z
<p>FEniCS instructions</p>
<p><b>New page</b></p><div>==Fenics==<br />
<br />
===Run FEniCS on iqaluk===<br />
<br />
<source lang="bash"><br />
module purge<br />
export LD_LIBRARY_PATH=/home/ppomorsk/linsoft/openmpi-1.6-install/lib:$LD_LIBRARY_PATH<br />
export PATH=/home/ppomorsk/linsoft/openmpi-1.6-install/bin:$PATH<br />
source /tmp/fenics/Work/FEniCS/share/dolfin/dolfin.conf<br />
<br />
export LD_LIBRARY_PATH=/home/ppomorsk/linsoft/boostinstall/lib/:$LD_LIBRARY_PATH<br />
export BOOST_DIR=/home/ppomorsk/linsoft/boostinstall/<br />
<br />
cd /tmp/fenics/Work/FEniCS/share/dolfin/demo/pde/poisson/python<br />
python demo_poisson.py<br />
</source><br />
<br />
<br />
===Compile FEniCS on iqaluk===<br />
<source lang="bash"><br />
module purge<br />
export LD_LIBRARY_PATH=/home/ppomorsk/linsoft/openmpi-1.6-install/lib:$LD_LIBRARY_PATH<br />
export PATH=/home/ppomorsk/linsoft/openmpi-1.6-install/bin:$PATH<br />
</source><br />
This enables the openmpi library.<br />
<br />
Install using dorsal. Download dorsal01.0.0 and unpack it (somewhere in /tmp for fast compile), cd into it:<br />
<source lang="bash"><br />
cp FEniCS/platforms/supported/rhel6.platform FEniCS/platforms/supported/rhel6iqaluk.platform <br />
</source><br />
<br />
edit FEniCS/platforms/supported/rhel6iqaluk.platform so it contains<br />
<br />
<source lang="bash"><br />
# Platform specific variables<br />
default PETSC_ARCH=linux-gnu-cxx-opt<br />
default SCOTCH_ARCH=pc_linux2<br />
default UMFPACK_INCLUDE_DIR=/usr/include/suitesparse/<br />
<br />
default BOOST_ROOT=/home/ppomorsk/linsoft/boostinstall/<br />
default BOOST_INCLUDEDIR=/home/ppomorsk/linsoft/boostinstall/include<br />
default BOOST_LIBRARYDIR=/home/ppomorsk/linsoft/boostinstall/lib<br />
default BOOST_USE_MULTITHREADED=OFF<br />
</source><br />
Remove vtk from list of package to be installed (but keep vtkdata)<br />
<br />
Modify the dorsal.cfg file, specify Work directory . Then run dorsal.<br />
<source lang="bash"><br />
./dorsal.sh FEniCS/platforms/supported/rhel6iqaluk.platform<br />
</source></div>
Ppomorsk